LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere10g1583	ATGGTGCTTTTCGTCCGTGGCTTCTGTTCTTTCGCGGGAAAACAAGCAAGAGATATGTTAATGTTGTGGAGGAAAACGGTTGTTGGCCAAAAAACAAAAATTCTGCAGCATAACCCGAAAATCTTCCAACCTTTTGGTCCGGTGCGTGTTGGAAAAGTCCTGGGCACTCTTCGCGGAAGAGGCAATATCTCAATAATTGTCGCTATAGTTGTCCCAATTATTGTTTCTGTGGCACTTTTTGTTGTGGCTTGCTGTTTCCTGCTTCGGAATGATCTTACAGACATAGAGTCTTTGCAATTTGAATTGGCTACAATAGAAGCTGCCACAAACAAGTTCTCAGATGAGAAGAAGATTGGCCAAGGTGGATTTGGTGCAGTTTATAAGGGTGCTTTGGAATTTAGGAACGAAGCTGTTCTTGTAGCCAAGCTTCAACATAGGAATTTAGTGAGGCTATTGGGATTTTGCTTGGAGGGGCAGGAGAAGATACTTGTCTATGAATATATTCCAAACAAAAGTCTTGATCACTTTCTCTTTGATCCTGAAAAGAAACTAATGTTAGATTGGTCAAGACGTTACAAGATCATAGTAGGGATTGCTAGAGGAATTCTTTATCTTCATGAAGATTCTCAACTTAGAATAATACATCGTGATCTCAAAGTTAGTAATGTTCTATTAGATGCCAATATGAACCCAAGGATTTCAGATTTTGGCCTGGCAAAAATCTTCCAAGGCGATCAGACTCAAGTAAATACAGGAAGAATAGTTGGGACTTATGGTTATATGTCTCCAGAGTATGCAATGCATGGACAGTTTTCCGTGAAATCAGATGTATTTAGCTTTGGTGTCTTAGTTTTGGAGATTGTTACTGGCAAAAAAAATACTGATTTTTACCAATCACATCAAGCTGATGACCTCTTGACTTATGCTTGGAAAAACTGGACAGAAAAAACACCTTTGGAGTTGTTGGATCCAGCACTGAGAGATTCTTATTCAAGAAATGAAGTCATAAGATGCATCCATATTGCTTTATTATGTGTTCAGGAGAATCCATTTGATAGACCTTCAATGGCAACAATAGCACTTATGCTCAACAGTTATTCTGTTACTTTGTCATTACCTCGACAACCAGCATCTTTTATGCGTGGAAGAACACCTAACAGGCTGAAAAATGGCGTTAATTCTGATCAATCTACTTGTTCAGTTCCATGGTCTAAAAATGAAGCATCTATTACTGAAGTTTACCCTCGATAA	1251	0.3869	MVLFVRGFCSFAGKQARDMLMLWRKTVVGQKTKILQHNPKIFQPFGPVRVGKVLGTLRGRGNISIIVAIVVPIIVSVALFVVACCFLLRNDLTDIESLQFELATIEAATNKFSDEKKIGQGGFGAVYKGALEFRNEAVLVAKLQHRNLVRLLGFCLEGQEKILVYEYIPNKSLDHFLFDPEKKLMLDWSRRYKIIVGIARGILYLHEDSQLRIIHRDLKVSNVLLDANMNPRISDFGLAKIFQGDQTQVNTGRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVLVLEIVTGKKNTDFYQSHQADDLLTYAWKNWTEKTPLELLDPALRDSYSRNEVIRCIHIALLCVQENPFDRPSMATIALMLNSYSVTLSLPRQPASFMRGRTPNRLKNGVNSDQSTCSVPWSKNEASITEVYPR	416

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere10g1583	416	SMART	serkin_6	112	367	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g1583	416	Gene3D	Transferase(Phosphotransferase) domain 1	168	372	-	-
	Dere10g1583	416	ProSiteProfiles	Protein kinase domain profile.	112	367	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g1583	416	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	58	412	-	-
	Dere10g1583	416	FunFam	cysteine-rich receptor-like protein kinase 10	168	370	-	-
	Dere10g1583	416	ProSitePatterns	Protein kinases ATP-binding region signature.	118	142	IPR017441	GO:0005524
	Dere10g1583	416	SUPERFAMILY	Protein kinase-like (PK-like)	98	388	IPR011009	-
	Dere10g1583	416	Gene3D	Phosphorylase Kinase; domain 1	132	167	-	-
	Dere10g1583	416	Pfam	Protein tyrosine and serine/threonine kinase	132	360	IPR001245	GO:0004672\|GO:0006468
	Dere10g1583	416	CDD	STKc_IRAK	118	364	-	-
	Dere10g1583	416	MobiDBLite	consensus disorder prediction	381	400	-	-
	Dere10g1583	416	Gene3D	Phosphorylase Kinase; domain 1	87	131	-	-
	Dere10g1583	416	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	213	225	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere10g1583	Dere-ChrDere10	28162417	28169560	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere10g1583	58	416	Receptor kinase-like Gene Family	AT4G05200	56.250	2.67e-152	446

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dere10g1583		PK_Tyr_Ser-Thr	3.6e-40	CL0016