Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1574 ATGACTATACCTTGCCTCTTTCTCATATTCTTCGTCGTCTTCCTCAGTTTTCTCCAATATTCCGCCATAGCCACTGTAATAGATGGCTCTGTTTTTCTAGGCAATACTAACCCTGTATATATCTACCACATCTGCTCAAACAACAAAACCTTCACTCCCAATACCTCCTACCATTTCAACCTCAACACCCTCCTTTCCTCCTTATCATCCCACGCCACCGGTACCATCGCATTCTTCAACACCACCGTCACCGGTGGCGAAAATACCGGCGAGGCCATCTACGGTCTCTTCCTGTGCCGCGGCGACGTCACTCATCAGATGTGCAAAAACTGCCTCCAATTGGCGATCCAGAAAATCGCGTCGCGCTGTTCCTACTCTAAAGAAGCCGTCGTCTGGTACCACGAGTGCTTAGTTCGGTATTCGAACTATTCCTTCTTCTCCGCCGTGGAGGAATGGCCGATGCTTAAGCTCGTGGATTTCAGCAGGATTCCGGACTCGTCAGAAGGTAGCCTCGGGTGGGTGTTGGCGAACACGCTGAACAAGGCGGTGGCGGAGGCGGCGGACGGTGTGGCCGCCGGCGAGAAGAAATTTGCGACGAGGACGGGGAAGTTGACGAATCAGACTGTGTACACTCTGGTACAGTGCTCACCGGATCTGACGAGCGGAGATTGCAGGCGGTGCCTGAGGGATATGATGGGAGAAATTCCGATGTGTTGCCTCGGAAGGGATGGCGGAATGGTCCTGTATCCCAGCTGCAGTTTGATGTTCGGCTTGCGCCTCTTTTACAGAGAGGTTGAAGTTGTTCACGCGCGTCCGGGTGCGCGTGGTGAGGGAGACCCAACACGGGAAGGAGTAAGGAAAGTCAGATCACGAACCATCATCATGGTGGTTGTCCCGATTGTTGTTACAACCATGCTTTACCATTTCATCTTCTATTTGCTACGAAGAAAAGCAAGGAGGAGATATGCTATTCTCAAAGAAAATTTTGGAAATGAATGTACGACTTTGGAGTCATTGCAATTTGATTTGGCTACAATTGAAGCTGCAACAAACAAGTTTTCATCTCAAAATAGGATAGGCTGTGGAGGATTTGGAGAAGTTTACAAGGGTACCCTTTTTAATGGACATGAAATAGCTGTAAAGAGACTTTCAGTGAATTCCGGACAAGGCGCTATGGAATTTAAGAATGAGGTTTTACTCATAGCCAAGCTTCAACATAGAAATTTAGTGACATTGTTGGGATTTTGCTTGCAAGAGCATGAGAAGATACTTGTTTATGAATTCGTGCCCAACAAAAGCCTTGACTACTTTCTCTTCGATTCTCAGAAGCGGAGACTATTAAATTGGTCTATGCGCTTCAAAATCATAGAAGGAATTGCTCGAGCAATTCTTTATCTTCATGAGCATTCACGCTTGAAAGTTATACATCGTGATCTTAAACCTAGTAATGTTCTACTAGACAACAATATGAATCCAAAACTTTCTGATTTTGGAACAGCAAGAATGGTAGCTATAGATCAAGACCAAGGTAGAACAGGAAGAATTGTTGGGACATACAATGATGGTCTCTTGACTTATGCTTGGAAACAATGGAGGGATGAGACACCACTAGAAATAATGGATCCAAATTTGAGAGAATCTTGTTGTGAAACTGAAGTGATTAAGTGCATCCAGATTGGCTTATTATGTGTTCAAGAGAATGCAGACGAAAGGCCTCATATATCACGAGTTGTTTCATATTTAAGTAATCTTTCAACAGATTTGTCATTGCCACGAGAACCTGCATTTTACGTACATGGTAGGATGGAGCCAATTGTGGGAGCAGTTGAATCAAATTCAGGTCATCAATCAACCAACAGTTCCATTCCATCTTCCATCAATGAAATAACTATAACTAGATCTTTTCCTCGATAA 1914 0.4462 MTIPCLFLIFFVVFLSFLQYSAIATVIDGSVFLGNTNPVYIYHICSNNKTFTPNTSYHFNLNTLLSSLSSHATGTIAFFNTTVTGGENTGEAIYGLFLCRGDVTHQMCKNCLQLAIQKIASRCSYSKEAVVWYHECLVRYSNYSFFSAVEEWPMLKLVDFSRIPDSSEGSLGWVLANTLNKAVAEAADGVAAGEKKFATRTGKLTNQTVYTLVQCSPDLTSGDCRRCLRDMMGEIPMCCLGRDGGMVLYPSCSLMFGLRLFYREVEVVHARPGARGEGDPTREGVRKVRSRTIIMVVVPIVVTTMLYHFIFYLLRRKARRRYAILKENFGNECTTLESLQFDLATIEAATNKFSSQNRIGCGGFGEVYKGTLFNGHEIAVKRLSVNSGQGAMEFKNEVLLIAKLQHRNLVTLLGFCLQEHEKILVYEFVPNKSLDYFLFDSQKRRLLNWSMRFKIIEGIARAILYLHEHSRLKVIHRDLKPSNVLLDNNMNPKLSDFGTARMVAIDQDQGRTGRIVGTYNDGLLTYAWKQWRDETPLEIMDPNLRESCCETEVIKCIQIGLLCVQENADERPHISRVVSYLSNLSTDLSLPREPAFYVHGRMEPIVGAVESNSGHQSTNSSIPSSINEITITRSFPR 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1574 637 ProSiteProfiles Gnk2-homologous domain profile. 157 261 IPR002902 -
Dere10g1574 637 SUPERFAMILY Protein kinase-like (PK-like) 339 603 IPR011009 -
Dere10g1574 637 ProSiteProfiles Protein kinase domain profile. 353 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1574 637 SMART serkin_6 353 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1574 637 Gene3D - 171 261 IPR038408 -
Dere10g1574 637 Gene3D - 37 145 IPR038408 -
Dere10g1574 637 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 429 520 - -
Dere10g1574 637 Gene3D Phosphorylase Kinase; domain 1 317 428 - -
Dere10g1574 637 Pfam Protein kinase domain 354 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1574 637 Pfam Salt stress response/antifungal 45 143 IPR002902 -
Dere10g1574 637 Pfam Salt stress response/antifungal 180 256 IPR002902 -
Dere10g1574 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Dere10g1574 637 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 523 633 - -
Dere10g1574 637 Gene3D Transferase(Phosphotransferase) domain 1 429 518 - -
Dere10g1574 637 Gene3D Transferase(Phosphotransferase) domain 1 519 591 - -
Dere10g1574 637 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 314 428 - -
Dere10g1574 637 ProSiteProfiles Gnk2-homologous domain profile. 39 145 IPR002902 -
Dere10g1574 637 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Dere10g1574 637 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 38 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1574 Dere-ChrDere10 27924370 27928298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1574 36 637 Receptor kinase-like Gene Family AT4G05200 41.906 4.59e-177 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere10g1574 Pkinase 1.2e-30 CL0016