Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1559 ATGGACTTGATCTTCGAGCCCCAGCCAGGCATGCCCTTCTCCATTGAAGTGGGATTCTTTGACACTGTTCTGGAGATCAAAGAGAAGGTTCAGAAGTACCAAGGCATTCCCATCTCCAAGCAAACCCTAATATTCAATGGCCAAGCTCTCCGAGACGACGGCGACATCGAGAAATACGAGATCCTCGATAATTCCCGCATTGAGCTCCGCGTCGCCGCCGATAACTCCTCCGCCAAGCCCGTCAAGACGGAGGAGTCGTCTCCGGCGCCGACCCCCAGAAAACTGCAGCTCAACGTGAAAATCCCGACGTCGAAAATCCACGTTCCTCTGGAAATGGACGCAAACGATACCGTTCTGAGGATGAAGGAAAAGGTTCAAGAAGTTGAAGCCGTACCAGTTAATCATAGGCTAGTGGTGCATGTGGCAGGTAAGGAACTGCATGACCATCAGATGCTGCGAGACTGTGAGGTTTCAGACAATTCTGAGATCGACGTCAGTTTTAGACCGTTGCCGGTGGCCGCGGCGACAAGCGGCGGAGGCGGCGGCGGCGGAGGAGGAGGGTCGAAGAAGTTGAAGGTGATGGTTTTGCCGAAGTGTGGGACGACGAAGATACCGGTGGAGGTGAATGCATGTGATAACGTGGGAGAGTTGAGGAAGGAGCTTCAGAAGCTGAACCAGAGGCTTCAGTTTCATCTTCCTCCGGAGGGTTATTTCTTCATTTACAGGCAGAATGTGATGGACGACGACAGGTCGTTTCGATGGCACAAGGTTGCGCAGGGTGACACCATTGAGATCTTCAATGGAAGCGTTACTGGGGGTGGAACATGA 828 0.529 MDLIFEPQPGMPFSIEVGFFDTVLEIKEKVQKYQGIPISKQTLIFNGQALRDDGDIEKYEILDNSRIELRVAADNSSAKPVKTEESSPAPTPRKLQLNVKIPTSKIHVPLEMDANDTVLRMKEKVQEVEAVPVNHRLVVHVAGKELHDHQMLRDCEVSDNSEIDVSFRPLPVAAATSGGGGGGGGGGSKKLKVMVLPKCGTTKIPVEVNACDNVGELRKELQKLNQRLQFHLPPEGYFFIYRQNVMDDDRSFRWHKVAQGDTIEIFNGSVTGGGT 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1559 275 SMART ubq_7 95 168 IPR000626 GO:0005515
Dere10g1559 275 SMART ubq_7 1 72 IPR000626 GO:0005515
Dere10g1559 275 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 94 - -
Dere10g1559 275 CDD Ubl_ubiquitin_like 97 165 - -
Dere10g1559 275 Pfam Ubiquitin family 10 71 IPR000626 GO:0005515
Dere10g1559 275 Pfam Ubiquitin family 98 168 IPR000626 GO:0005515
Dere10g1559 275 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Dere10g1559 275 Gene3D - 70 168 - -
Dere10g1559 275 SUPERFAMILY Ubiquitin-like 192 266 IPR029071 -
Dere10g1559 275 Gene3D - 1 69 - -
Dere10g1559 275 Coils Coil 207 227 - -
Dere10g1559 275 SUPERFAMILY Ubiquitin-like 88 172 IPR029071 -
Dere10g1559 275 Gene3D - 190 267 - -
Dere10g1559 275 CDD Ubl_ubiquitin_like 202 266 - -
Dere10g1559 275 MobiDBLite consensus disorder prediction 73 93 - -
Dere10g1559 275 MobiDBLite consensus disorder prediction 79 93 - -
Dere10g1559 275 FunFam Ubiquitin-like superfamily protein 1 72 - -
Dere10g1559 275 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Dere10g1559 275 ProSiteProfiles Ubiquitin domain profile. 95 168 IPR000626 GO:0005515
Dere10g1559 275 SUPERFAMILY Ubiquitin-like 8 73 IPR029071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1559 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 33.333 9.90e-06 42.4