Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1558 ATGGATACCCAACTTCGACATCAATCCGCGGTTTTAGAAAGCCCTAGCAAGTTAGAATTCGTTAAGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTCGAGAGCTCGGATACCATTGACAACGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCGGACCAACAGCGTCTGATCTTCGCCGGTAAGCAACTTGAGGACGGCCGTACGCTTGCCGACTACAACATTCAAAAGGAATCTACCCTCCACCTTGTACTCCGTCTACGTGGTGGTATGCAGATCTTTGTCAAGACTCTTACCGGTAAGACCATCACTCTGGAGGTCGAGAGCTCTGACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAACAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGTCGTACATTGGCTGATTACAACATCCAAAAGGAGTCCACTCTCCACCTTGTTCTCCGACTCCGTGGAGGTATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCAGACACTATTGATAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAGCAGAGGTTGATCTTCGCGGGAAAGCAGCTTGAGGATGGCCGTACCTTGGCTGATTACAACATCCAAAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTTCGTGGAGGAATGCAAATTTTTGTTAAGACCCTCACCGGTAAGACAATCACCCTTGAGGTGGAGAGCTCTGACACTATTGACAACGTCAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCGGACCAGCAGAGACTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGAACATTGGCTGACTATAACATCCAGAAGGAGTCAACTCTCCATCTTGTTTTGCGTCTCCGTGGTGGTATGCAGATTTTCGTGAAGACCCTCACTGGCAAGACAATCACCTTGGAGGTTGAGAGCTCAGACACAATTGACAATGTGAAGGCTAAGATCCAAGATAAGGAGGGCATCCCCCCAGACCAGCAGAGGTTAATTTTCGCTGGGAAGCAGCTTGAAGATGGACGTACCCTGGCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTGGTGCTTCGTCTCAGGGGAGGTATGCAGATCTTTGTGAAGACCTTGACAGGCAAAACTATTACTCTGGAGGTTGAGAGTTCGGACACCATTGACAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATCCCCCCAGACCAGCAGAGATTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGAACACTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTGCTGCGTCTTCGTGGTGGATTCTGA 1440 0.5 MDTQLRHQSAVLESPSKLEFVKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1558 479 ProSitePatterns Ubiquitin domain signature. 125 150 IPR019954 -
Dere10g1558 479 SUPERFAMILY Ubiquitin-like 22 98 IPR029071 -
Dere10g1558 479 CDD Ubl_ubiquitin 23 98 - -
Dere10g1558 479 FunFam Polyubiquitin 3 23 98 - -
Dere10g1558 479 FunFam Polyubiquitin 3 251 326 - -
Dere10g1558 479 SUPERFAMILY Ubiquitin-like 98 174 IPR029071 -
Dere10g1558 479 CDD Ubl_ubiquitin 175 250 - -
Dere10g1558 479 SMART ubq_7 175 246 IPR000626 GO:0005515
Dere10g1558 479 SMART ubq_7 251 322 IPR000626 GO:0005515
Dere10g1558 479 SMART ubq_7 327 398 IPR000626 GO:0005515
Dere10g1558 479 SMART ubq_7 23 94 IPR000626 GO:0005515
Dere10g1558 479 SMART ubq_7 403 474 IPR000626 GO:0005515
Dere10g1558 479 SMART ubq_7 99 170 IPR000626 GO:0005515
Dere10g1558 479 Gene3D - 327 402 - -
Dere10g1558 479 Gene3D - 403 479 - -
Dere10g1558 479 Gene3D - 17 98 - -
Dere10g1558 479 Gene3D - 252 326 - -
Dere10g1558 479 Gene3D - 176 251 - -
Dere10g1558 479 Gene3D - 99 175 - -
Dere10g1558 479 CDD Ubl_ubiquitin 327 402 - -
Dere10g1558 479 ProSiteProfiles Ubiquitin domain profile. 251 326 IPR000626 GO:0005515
Dere10g1558 479 ProSiteProfiles Ubiquitin domain profile. 175 250 IPR000626 GO:0005515
Dere10g1558 479 ProSiteProfiles Ubiquitin domain profile. 403 478 IPR000626 GO:0005515
Dere10g1558 479 ProSiteProfiles Ubiquitin domain profile. 327 402 IPR000626 GO:0005515
Dere10g1558 479 FunFam Polyubiquitin 3 175 250 - -
Dere10g1558 479 PANTHER UBIQUITIN 99 178 - -
Dere10g1558 479 ProSiteProfiles Ubiquitin domain profile. 99 174 IPR000626 GO:0005515
Dere10g1558 479 ProSiteProfiles Ubiquitin domain profile. 23 98 IPR000626 GO:0005515
Dere10g1558 479 ProSitePatterns Ubiquitin domain signature. 277 302 IPR019954 -
Dere10g1558 479 Pfam Ubiquitin family 177 248 IPR000626 GO:0005515
Dere10g1558 479 Pfam Ubiquitin family 25 96 IPR000626 GO:0005515
Dere10g1558 479 Pfam Ubiquitin family 405 476 IPR000626 GO:0005515
Dere10g1558 479 Pfam Ubiquitin family 253 324 IPR000626 GO:0005515
Dere10g1558 479 Pfam Ubiquitin family 101 172 IPR000626 GO:0005515
Dere10g1558 479 Pfam Ubiquitin family 329 400 IPR000626 GO:0005515
Dere10g1558 479 SUPERFAMILY Ubiquitin-like 250 326 IPR029071 -
Dere10g1558 479 CDD Ubl_ubiquitin 99 174 - -
Dere10g1558 479 SUPERFAMILY Ubiquitin-like 174 250 IPR029071 -
Dere10g1558 479 ProSitePatterns Ubiquitin domain signature. 49 74 IPR019954 -
Dere10g1558 479 CDD Ubl_ubiquitin 251 326 - -
Dere10g1558 479 ProSitePatterns Ubiquitin domain signature. 429 454 IPR019954 -
Dere10g1558 479 FunFam Polyubiquitin 3 99 174 - -
Dere10g1558 479 SUPERFAMILY Ubiquitin-like 326 402 IPR029071 -
Dere10g1558 479 FunFam Polyubiquitin 3 327 402 - -
Dere10g1558 479 CDD Ubl_ubiquitin 403 478 - -
Dere10g1558 479 ProSitePatterns Ubiquitin domain signature. 353 378 IPR019954 -
Dere10g1558 479 SUPERFAMILY Ubiquitin-like 402 478 IPR029071 -
Dere10g1558 479 ProSitePatterns Ubiquitin domain signature. 201 226 IPR019954 -
Dere10g1558 479 PRINTS Ubiquitin signature 54 74 IPR019956 -
Dere10g1558 479 PRINTS Ubiquitin signature 75 96 IPR019956 -
Dere10g1558 479 PRINTS Ubiquitin signature 33 53 IPR019956 -
Dere10g1558 479 FunFam Polyubiquitin 3 403 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1558 Dere-ChrDere10 27679402 27681696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1558 23 99 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 6.74e-47 157