Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1557 ATGGCTGCCTCGGAGCATTCTTCCACTGATGATGCCTTGGAGAACCTGCAAGAGGAGACCAGCAAAGAATCAAAGCTAGAATTTTCTGACGATGAGGAAGCATTGATTATCAGAATGTATAATCTAGTTGGTGAAAGGTGGGCTTTAATAGCTGGGAGGATCCCTGGAAGAACAGCTGAAGAGATTGAAAAGTACTGGACAGCTACATACTCAACAAGTGAATGA 225 0.4356 MAASEHSSTDDALENLQEETSKESKLEFSDDEEALIIRMYNLVGERWALIAGRIPGRTAEEIEKYWTATYSTSE 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1557 74 FunFam MYB-like transcription factor 27 69 - -
Dere10g1557 74 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Dere10g1557 74 MobiDBLite consensus disorder prediction 11 27 - -
Dere10g1557 74 SMART sant 24 72 IPR001005 -
Dere10g1557 74 MobiDBLite consensus disorder prediction 1 27 - -
Dere10g1557 74 Pfam Myb-like DNA-binding domain 27 66 IPR001005 -
Dere10g1557 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 27 71 - -
Dere10g1557 74 SUPERFAMILY Homeodomain-like 27 70 IPR009057 -
Dere10g1557 74 CDD SANT 27 66 IPR001005 -
Dere10g1557 74 Gene3D - 27 69 - -
Dere10g1557 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 74 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1557 Dere-ChrDere10 27664495 27665150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1557 29 68 MYB Transcription Factor Family AT5G35550 62.500 1.02e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere10g1557 Myb_DNA-binding 1.2e-08 CL0123