Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1550 ATGGCTACCCCTCACCAATCTCTCCTTGACAAACCCGGAAAACCCATTTCCAGGACCATCTGGCTTGTTCTTTCTGTAGCTGCTATCATAAGCTCCTCAGCCCTTATTGCTTCTTATTACTTCAAACCCATCTCCTTCTTCAACCTCACCCTCCCAAATAATCTCTGTGAGCATGCCCTTGACAAAACATCATGCTTAGCCCATGTCTCTGAACTACCCAAAGTTTCAACCTTTACCACACAGGACCGCACATCCCACTTGCTCCAATCCTTCCTAATGAAATCCACCTCGCAAATCCAAAAGACTATAGACACAACCAAAGCCATTAAGTATAGAATTAACAATCCAAAAGTGCAACAAGCTTTGCTAGACTGTGAGAATCTCCTAGGCTTGTCAGTTGACAGAGTATGGGACTCAATGATGGCTCTCACAAGAAAGACCACCAAATCCCACCAAGATGCTCACACATGGCTGAGTAGTGTGCTCACTAACCACATCACTTGCTTGGATGGGTTGGAAGGGTCACCTAGAACCCTTATGGAGGTTGAGCTCAATGACTTGGTCTCTAGAGCTAGAACCTCTCTAGCCATGCTTTTTCATGTTTTGCCTTCTACGGTTAATGATGCTATCGATGAGCCACTTAATGGGGGATTTCCCTCATGGGTGACAAGTAAGGACAGGAAGCTTCTGGAGGCTTCTGCTAATGACATAAAGGCTAACGTTGTGGTGGCTCAGGATGGAAGTGGCAAGTTTAAGACAGTGAAAGAGGCAGTGGCTTCGGCACCTGATAATGGTAAGACGAGGTATGTTATATATGTGAAGAAGGGAACTTATAAAGAGAATGTCGAAATAGGATCGAAGAAGAAGAATGTGATGCTGGTGGGTGATGGTATGGACAAAACTATCATCACTGGAAGCTTGAATTTCGTGGATGGAACACCTACCTTCAGCACTGCCACCGTCGCTGCGGTTGGCGACGGCTTCATAGCCCAAGACATATGGTTCCAAAACACGGCAGGTCCTCAGAAGCACCAAGCTGTGGCTCTCCGCGTCGGCGCCGATCTCTCCGTCATCAACCGCTGCCGTATCGACGCCTTCCAGGACACTCTCTACGCCCACTCCAACAGACAATTCTACCGTGACTCCTTCATCACCGGCACAGTTGACTTCATCTTCGGTAACGCCGCAGTTGTATTCCAAAAATGCAACATAGTGGCTCGAAAGCCCTTAAATAACCAGAACAACATGCTCACGGCTCAGGGACGCGAAGACCCAAACCAGAACACAGGTACTTCCATTCAGCAATGTAACCTAACACCAAGCTCCGATCTCAAGCCCGTCGTTGGCTCAATCGAAACCTTCTTGGGCCGCCCATGGAAGGAATACTCTAGAACTGTTGTGATGCAGTCGTTCCTTGATAGCCACATTGACCCAACAGGGTGGGCCCCATGGGATGACAAGCAGTCCACGTTGAAGAATTTGTATTATGGAGAGTACATGAACAATGGGCCTGGTGCCGGCACTGGCAAGAGAGTGAAATGGGCTGGGTATCATGTAATTACGAGTGCTGCTGAAGCCAGTAAGTTCACAGTGGCTCAGCTCATTCAAGGTGGGACATGGTTGAAGAACACAGGGGTGGCCTTCATTGAGGGGCTTTAG 1659 0.4822 MATPHQSLLDKPGKPISRTIWLVLSVAAIISSSALIASYYFKPISFFNLTLPNNLCEHALDKTSCLAHVSELPKVSTFTTQDRTSHLLQSFLMKSTSQIQKTIDTTKAIKYRINNPKVQQALLDCENLLGLSVDRVWDSMMALTRKTTKSHQDAHTWLSSVLTNHITCLDGLEGSPRTLMEVELNDLVSRARTSLAMLFHVLPSTVNDAIDEPLNGGFPSWVTSKDRKLLEASANDIKANVVVAQDGSGKFKTVKEAVASAPDNGKTRYVIYVKKGTYKENVEIGSKKKNVMLVGDGMDKTIITGSLNFVDGTPTFSTATVAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADLSVINRCRIDAFQDTLYAHSNRQFYRDSFITGTVDFIFGNAAVVFQKCNIVARKPLNNQNNMLTAQGREDPNQNTGTSIQQCNLTPSSDLKPVVGSIETFLGRPWKEYSRTVVMQSFLDSHIDPTGWAPWDDKQSTLKNLYYGEYMNNGPGAGTGKRVKWAGYHVITSAAEASKFTVAQLIQGGTWLKNTGVAFIEGL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1550 552 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Dere10g1550 552 NCBIfam pectinesterase inhibitor domain 29 177 IPR006501 GO:0004857
Dere10g1550 552 FunFam Pectinesterase 234 552 - -
Dere10g1550 552 Pfam Plant invertase/pectin methylesterase inhibitor 53 186 IPR006501 GO:0004857
Dere10g1550 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 197 IPR035513 -
Dere10g1550 552 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Dere10g1550 552 CDD PMEI-like_4 64 198 - -
Dere10g1550 552 PANTHER PECTINESTERASE 29 542 - -
Dere10g1550 552 SUPERFAMILY Pectin lyase-like 238 551 IPR011050 -
Dere10g1550 552 Gene3D - 234 552 IPR012334 -
Dere10g1550 552 Pfam Pectinesterase 240 537 IPR000070 GO:0030599|GO:0042545
Dere10g1550 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 201 IPR035513 -
Dere10g1550 552 SMART PMEI_2 47 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1550 Dere-ChrDere10 27625502 27627612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1550 1 552 Carbohydrate Esterase AT1G11580 55.872 0.0 607