Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1549 ATGTTTTTAAGTACACCTCTGTACACTTCTCCATTCAAAATGGCTAACCCTCACCAATCTCTCCTTGACAAACCCAGAAAATCCATTTCCAAAACCCTCTGGCTTGTTCTTTCTCTAGCTGCTATCATAAGCTCCTCAGCCCTTATTGCTTCTTATTACTTCAAACCCATCTCCTTCTTCAACCTCTCGCTCCCCCATAATCTCTGTGAGCATGCCCTTGACAAGTCATCATGCTTGGCCCATGTCTCTGAATTACCCAAGCTTTCAACCTTTACTACACAGAACCACGCATCCTACTTGCTCCAATCCTTCCTTATGAAATCTACCTCAAAAATCCAGAAAACTATAGACACAACCAAAGTCATCAAGTACAGAATCAACGATCCAAAAGAGCAACAAGCTTTGCTTGTTTGTGAGGAACTCCTAGACTTGTCCATTGAGAGGATTTGGGACTCAATGGTGGCTCTCACAAACAAGACTATCACATCCCACCATGATGCTCACACATGGCTGAGCAGTGTCCTCACTAACCACATCACTTGCTTGGATGGGTTGGAAGGGTCAGCTCGAGCCCTCATAGAGGCTGAGCTCGATGACTTAGTCTCCAGAGCTAGAACCTCCCTAGCCATGTTGGTTCATGTTATGCCCTCAACTATTGATGCCATTGATGAGCCACTTAATGGGGAATTTCCCTCATGGGTGACAAGTAAGGACAGGAAGCTTCTGGAGGCTTCTGCTAATGACATAAAGGCTAACGTTGTGGTGGCCAAGGATGGAAGTGGCAAGTTCAAGACAGTGAAAGAGGCTGTGGCATCGGCACCTGATAATGGTAAGACGAGGTATGTTATATATGTGAAGAAGGGAACTTACAAAGAGAATGTTGAAATTGGATCAAAGAAGAAGAATGTGATGCTGGTGGGTGATGGCATGGACAAAACTATCATCACTGGAAGCTTGAATTTCGTGGATGGAACACCCACTTTCAGGACTGCCACTGTCGCTGCTGTTGGGGATGGTTTCATAGCCCAAGACATATGGTTCCAAAACACGGCAGGCCCACAGAAGCACCAAGCGGTGGCTCTCCGTGTCGGGGCCGATCTCTCCGTCATCAACCGCTGCCGTATTGACGCCTTCCAAGACACTCTCTACGCCCACTCCAACAGGCAATTCTACCGTGACTCCTTCATCACCGGCACAGTTGACTTCATCTTTGGTAATGCAGCAGTTGTGTTCCAAAAATGCAACCTAGTGGCCCGAAAGCCCTTGGACAAGCAAAACAACATGGTCACGGCCCAGGGACGTGAAGACCCAAACCAAAACACAGGCACTTCCATTCAGCAATGTAATTTGACACCAAGCTCCGATCTCAAGCCCGTCATGGGCTCAATCAAAACCTTCTTGGGCCGCCCATGGAAGGAGTACTCTAGAACTGTTGTGATGCAGTCATTCTTGAGTAACCATATTGACCCAACAGGATGGGCCCCATGGGATGATAAGCAGTCCACATTGAAGAATTTGTATTATGGAGAGTACATGAACAATGGGCCTGGTGCTGGTACCAGCAAGAGAGTGAAATGGGCTGGGTATCATGTCATTACAAGTGCTGCTGAAGCCAGTAAGTTCACAGTGGCCCAGCTCATTCAAGGTGGGACATGGTTGAAGAACACCGGGGTGGCCTTCATTGAGGGGCTCTAG 1695 0.4761 MFLSTPLYTSPFKMANPHQSLLDKPRKSISKTLWLVLSLAAIISSSALIASYYFKPISFFNLSLPHNLCEHALDKSSCLAHVSELPKLSTFTTQNHASYLLQSFLMKSTSKIQKTIDTTKVIKYRINDPKEQQALLVCEELLDLSIERIWDSMVALTNKTITSHHDAHTWLSSVLTNHITCLDGLEGSARALIEAELDDLVSRARTSLAMLVHVMPSTIDAIDEPLNGEFPSWVTSKDRKLLEASANDIKANVVVAKDGSGKFKTVKEAVASAPDNGKTRYVIYVKKGTYKENVEIGSKKKNVMLVGDGMDKTIITGSLNFVDGTPTFRTATVAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADLSVINRCRIDAFQDTLYAHSNRQFYRDSFITGTVDFIFGNAAVVFQKCNLVARKPLDKQNNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKPVMGSIKTFLGRPWKEYSRTVVMQSFLSNHIDPTGWAPWDDKQSTLKNLYYGEYMNNGPGAGTSKRVKWAGYHVITSAAEASKFTVAQLIQGGTWLKNTGVAFIEGL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1549 564 CDD PMEI-like_4 76 212 - -
Dere10g1549 564 NCBIfam pectinesterase inhibitor domain 37 190 IPR006501 GO:0004857
Dere10g1549 564 SUPERFAMILY Pectin lyase-like 250 563 IPR011050 -
Dere10g1549 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 210 IPR035513 -
Dere10g1549 564 SMART PMEI_2 60 210 IPR006501 GO:0004857
Dere10g1549 564 Gene3D - 246 564 IPR012334 -
Dere10g1549 564 PANTHER PECTINESTERASE 49 554 - -
Dere10g1549 564 ProSitePatterns Pectinesterase signature 1. 277 296 IPR018040 -
Dere10g1549 564 Pfam Pectinesterase 252 549 IPR000070 GO:0030599|GO:0042545
Dere10g1549 564 Pfam Plant invertase/pectin methylesterase inhibitor 65 204 IPR006501 GO:0004857
Dere10g1549 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 214 IPR035513 -
Dere10g1549 564 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Dere10g1549 564 FunFam Pectinesterase 246 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1549 Dere-ChrDere10 27615354 27619866 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1549 14 564 Carbohydrate Esterase AT1G11580 57.219 0.0 628