Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1546 ATGGCTACCCAACAGCCTCTACTAGACAAACCCAGCAAATCCATTTCCAAAGCTGTCTTGCTACTTCTTTCTGTAGCTGATATCATAGGCTCCTCAGCTCTCATGGCTTCTTATCTCATCAAATCCACCTCCTTGTCCAATCCCTTTCTTCCTGATAGTCTTTGTGAACATTCTCTTCACAAAACATCATGCTTATCCCATGTCGAAGTAGCCAAAGGTTCAATCTTTGCCACAAAAGACCAAAAGCTCCACCTGCTCCAATCCTTTCTCATGAAATCAACCTCTTACATCCAAAAAGCAATGGACACAGCCAAAGCTATCGAACACAGAATTAATAGTCCAAAACAGCATGAAGCTTTGCGAGGCTGTGAGCAGCTTCTTGACTTGTCAATGGATAGAGTTTTTGACTCGATGGTGGCTCTTGCTAAAAAGACTACCAAATCCTACCAAGATGTTCACACTTGGCAAAGTACTGTGCTCACTAACCATTTCACTTGCTTGGATGGGTTAGAAGGGTCAGCTCGAGCCCTTTTGGAGGCTGAGCTCAATGACTTGATTTCCCGCGCAAGAGCCTCCTTAGCCATACTTGTTCATGTTTTGCCTTCTAAGGTTGGTGATGTCATTGATGAGCCACTTGATGGGAAGTTTCCCTCACGGGTGACAAGCAAGGATCGGAGGCTATTAGAGCTGTCTTCGGCTAAGGATATTGAGGCAGATGTTGTGGTGGCTAAGGATGGAAGTGGCGACTTCAAGAATGTGACAAAGGCTGTGGCTTCAGTACCTGATAAAAGAAAGACAAGGTACGTTATATATGTAAAGAAGGGAACGTACGAAGAGAATGTTGAAATTGGTAAGACGAAGAAGAATATTATGCTGGTGGGAGATGGTATGGATGAAACTATTATCACAGGCAGCTTGAATTATGCAGACGGAACACCCACCTACAAGACTGGCACCGTCAGTAAGGATCTTAATTAA 978 0.4397 MATQQPLLDKPSKSISKAVLLLLSVADIIGSSALMASYLIKSTSLSNPFLPDSLCEHSLHKTSCLSHVEVAKGSIFATKDQKLHLLQSFLMKSTSYIQKAMDTAKAIEHRINSPKQHEALRGCEQLLDLSMDRVFDSMVALAKKTTKSYQDVHTWQSTVLTNHFTCLDGLEGSARALLEAELNDLISRARASLAILVHVLPSKVGDVIDEPLDGKFPSRVTSKDRRLLELSSAKDIEADVVVAKDGSGDFKNVTKAVASVPDKRKTRYVIYVKKGTYEENVEIGKTKKNIMLVGDGMDETIITGSLNYADGTPTYKTGTVSKDLN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1546 325 SUPERFAMILY Pectin lyase-like 237 320 IPR011050 -
Dere10g1546 325 Gene3D - 233 324 IPR012334 -
Dere10g1546 325 CDD PMEI-like_4 63 197 - -
Dere10g1546 325 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 199 IPR035513 -
Dere10g1546 325 Pfam Pectinesterase 239 321 IPR000070 GO:0030599|GO:0042545
Dere10g1546 325 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 195 IPR035513 -
Dere10g1546 325 NCBIfam pectinesterase inhibitor domain 52 177 IPR006501 GO:0004857
Dere10g1546 325 PANTHER PECTINESTERASE 36 321 - -
Dere10g1546 325 Pfam Plant invertase/pectin methylesterase inhibitor 52 185 IPR006501 GO:0004857
Dere10g1546 325 SMART PMEI_2 46 195 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1546 Dere-ChrDere10 27587835 27588812 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1546 3 323 Carbohydrate Esterase AT1G11580 40.909 9.45e-72 231