Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1543 ATGTCTGGCTCTGCCACTGTTTACATAGGACTTCGATTGTTTGAAGCCATCCCTTTGCAGGTGCCTGCTGATCAAAAGCTTCCTTCCCTCTATCTTTTGGACAGTATTGTGAAGAATGTTGGTCAGGAATATTTTAGATACTTCTCTTCGTGCCTGCCTGAAGTTTTCTGTGAGGCATACAGGCAGGTTCACCCTAAGTTGCATAATGCTATGCGCCATCTCTTTGGCACCTGGTTAACAGTCTTTCCCCCTTCTACCCTATGCAAGATTGAAGCTCAGCTGCAGTTTTCTGATGCAACTAATAATCGATCATCTATCACTGATTCCCTCAGGGTGTCTGAATCACCTCAAGCAACTCGTGGCATACATATTAATCCAAAGTACTTGCAACATTTGGAACACTCTACTATTGATAGTGTTGGAGGTGAAAAATTGGAGTCAACAGTAAATGTGGGTCTTACAAGTTTTGGCCTTGGAGCTAGTAAGATGCGTCAACCTTTAACTGGTAGGCTTGGAAGATCTTCACCGTCAGGAATTGGACTTGATAGGCCTTTGTCAGCAACTATAGATGAGTGTGCAGTTGACAATTCTGCTAGCAGTATAGTTGAGAGAGAGTCTCTTTCTCGTCTTGCATTTGATTATGGTGCTGGTAAAGCAGTAAGTAGAGGTGAAGAGTTGAGTGAGTGGCAACGAAAACAGTATTCTGATGATGGCCGGAATCGATTTCAAAATTCTATGTCACACAGCCTTAGTAATGGGCATCAGCGTGAAAGTATAAGAGCTTTAATTGATGCATATGGCAGTGATAAAAGCAGTGAAACTTCAATCAATAAGCCTTTGTTGGTTGAACGCCAGCACACAAATGGTATAAACAAGGTTGTGTCAACATCATGGCAAAACACTGAAGAGGAGGAATTTGACTGGGAAGATATGAGTCCGACATTAGTGGACCATAGTAGGAATAATGAATTCTTGCCATCAAGTGTTGGTTTCTCCAGGGATGGGCCTATTACTGGTTCAGCTACTTTGGAGCAGGATTCGAGGCGCAGTTGGTCTAGTCGGTCTCAGCTTTCACCAGTGGACAATTCTTCTGTTATAGCAGGGGATGCCTTTGTTTCTTCAAGTTTTGGACGTCGATCACCAGTTCAGGTATCTGGTTTCCAAAATCAGACAAATCAGAGTTTAAGCTCCCATCATCCTCATGAAGCTTGGAAGCTTTCACATCATTCTTTTAATTCTTCAGAAAAGCTCTTTCATATTAGAGGACGAGCAAGCAATCTTCAGATATCTCATGTCAGTGACCTTCCAAAGACTGATGTAAACCAATATGGGACTAGGCCTGCTTTGTCCAGAATGGGTTTTAGTCTTGAGTCTAATGTAGAGACTCGTGCACCAATTTTATCAGCATCTCTTGGAATTAGGCCCTCTATTAATGTTAATGCTGTTCATCTGCCCACCTTAAACTCCATAGTTCCTTTGGATAAACATGCTAGAAGTCAGTTTGAAGCAATAAATGCTAGTAGCACCATTGTAAATCGTGGTGAAAATAAATCGTCATTTATGCCTGAGCAACCGTTGGACATTGTTGACAACAAGGTTCTAGGTTTATCAAAGCTGCATCTGTTGCATAATCAGCTATCTGGGCAAATTTCACTTAACCAGCAAAACCGTGGACAAGCACCATTGCTGCAAGTTTTTCCATCTCAGGATGTGCAAGAAAAATTCCTTAGATCACAAGCTTCAGAAGCTTTGCAATTTAGACATGGGAGCTCTTTGCAAGGGCATACTGGTGCTATAAGTACAGCCACACCAAATTCGCTTCCTGCTGGACATTTCCCTTTTCCAGTCCAAAACATTGCAAACAATTCTTCTCATTTACAGGGGGGAGCCTTGATGTCTCTACCTCCAGTCTCCCATCCTGCTACATCACAAACAGTACCTCATTCAAGTGCTGGTCCGATTGCATCAAACCAACAGCGAGGTGTTGCATTTTCTGGATTAATTAATTCACTTATGGCTCAAGGTTTGATCTCATTGAGTAACCAACCTCCTGGACAGGATTCTGTTGGAACTGAGTTTAATCCAGATGTTCTAAAGATTCGTCATGAGTCTGCAATCAGTGCCTTATATGGTGATCTTCCAAGACAATGCACAACATGTGGCCTTCGATTCAAGTGCCAAGAGGAGCACAGTAATCATATGGATTGGCATGTAACTAAGAACCGGATGTCCAAAAACCGTAAGCAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGAGAGAATGTGGCTTAGTGGTGCAGAGGCATTAGGAACAGAATCAGTCCCTGGTTTTTTGCCAAATGAGATTATAGAGGAAAAGAAAGATGATGAAGAGTTGGCTGTGCCAGCTGATGAGGACCAGAATACATGTGCATTATGTGGTGAGCCTTTTGATGAGTTTTACAGTGATGAAACTGAGGAATGGATGTACAAAGGAGCTGTATATCTCAATGCTCCCAAGGGAACAATTGCAGGCATGGATAGGTTGCAGTTAGGTCCCATTGTTCATGCGAAATGCAGATCTGAGTCTAGTATGGTCCCCTCTGAAGATTATGGACAGGATGAAAGGGATTACATTGCAGTTCTAGAACATTATCCTAGAGGTGTACGCATTCTTGTTAATTCCCAGAAATTAGGTGAAGAATGA 2685 0.4238 MSGSATVYIGLRLFEAIPLQVPADQKLPSLYLLDSIVKNVGQEYFRYFSSCLPEVFCEAYRQVHPKLHNAMRHLFGTWLTVFPPSTLCKIEAQLQFSDATNNRSSITDSLRVSESPQATRGIHINPKYLQHLEHSTIDSVGGEKLESTVNVGLTSFGLGASKMRQPLTGRLGRSSPSGIGLDRPLSATIDECAVDNSASSIVERESLSRLAFDYGAGKAVSRGEELSEWQRKQYSDDGRNRFQNSMSHSLSNGHQRESIRALIDAYGSDKSSETSINKPLLVERQHTNGINKVVSTSWQNTEEEEFDWEDMSPTLVDHSRNNEFLPSSVGFSRDGPITGSATLEQDSRRSWSSRSQLSPVDNSSVIAGDAFVSSSFGRRSPVQVSGFQNQTNQSLSSHHPHEAWKLSHHSFNSSEKLFHIRGRASNLQISHVSDLPKTDVNQYGTRPALSRMGFSLESNVETRAPILSASLGIRPSINVNAVHLPTLNSIVPLDKHARSQFEAINASSTIVNRGENKSSFMPEQPLDIVDNKVLGLSKLHLLHNQLSGQISLNQQNRGQAPLLQVFPSQDVQEKFLRSQASEALQFRHGSSLQGHTGAISTATPNSLPAGHFPFPVQNIANNSSHLQGGALMSLPPVSHPATSQTVPHSSAGPIASNQQRGVAFSGLINSLMAQGLISLSNQPPGQDSVGTEFNPDVLKIRHESAISALYGDLPRQCTTCGLRFKCQEEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTESVPGFLPNEIIEEKKDDEELAVPADEDQNTCALCGEPFDEFYSDETEEWMYKGAVYLNAPKGTIAGMDRLQLGPIVHAKCRSESSMVPSEDYGQDERDYIAVLEHYPRGVRILVNSQKLGEE 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1543 894 MobiDBLite consensus disorder prediction 326 359 - -
Dere10g1543 894 ProSitePatterns Zinc finger C2H2 type domain signature. 717 737 IPR013087 -
Dere10g1543 894 Gene3D - 12 96 IPR008942 -
Dere10g1543 894 CDD CID_Pcf11 19 95 IPR047415 -
Dere10g1543 894 ProSiteProfiles CID domain profile. 1 98 IPR006569 -
Dere10g1543 894 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 19 866 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Dere10g1543 894 SMART 558neu5 2 95 IPR006569 -
Dere10g1543 894 SUPERFAMILY ENTH/VHS domain 19 95 IPR008942 -
Dere10g1543 894 Pfam CID domain 20 86 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1543 Dere-ChrDere10 27528240 27533563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1543 613 857 C2H2 Transcription Factor Family AT4G04885 67.568 1.40e-109 354