Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1542 ATGTGTGGTGGGACAGGTACAATCAATCTCACAGGATATAGTACAAAAGCGGGTTCTATCAATGGCCACGTCACGATCACCATAAGGTTCTCACATGGAAGCCGTTCGATCGATTTCTTCACCAGGTCGACAACGGTACAAGTGAAACTGTGCAAGTTCGCAACCTTCTTTCTCTCTCTCGCTCGCCCTCTTTCTGGCGATGGTGGGAGAGGAAAATCCCCATGTTTCACTTCTCGCCCTCTCTGTTTGGGGCAAATCCAAAGCCCTGATCCTATCCTTTACCCAATCTCTGTGTATGTTCTGATCTTCATGGACCCTCAAAATCTCTTATTTTCCCGAGAAAACCCTAGACCCCCCACCTTCTCGACTACTTCAGTTGTCTCTTCAAAACCCACCATTCCCAGTGAGATCGCACAGAAGCCTTCCCCGTCGATTCTGGTGGGCCGATTCAAGGCTTTGCTGAAGGAGCGCGAGGATGAATACAGGGCTTCCTCCGGTGATGACGTGCCGGTGCCACCCCCTAGTACTGAGGAAATTGTGCAAATTTACCAGCTATTGTTGTCAGACCTCACCTGCAATTTGAAGCCCATCATTACGGATCTTACCATTATTGCTGAGCTCCAGCTAGAGCATGCCAGGGGCATCGCCGATGCAATTTGCGCTCGGATTCTCGAGAGAAGTATCTTACCATATGTGAAGTTGATATTCAATTCTGCTGGAGACGAAGTCTATGGCTTGTTTTTTTTTTTTTTTGTTAACTTTGTTAATCCTGTTATGTACCAAGATCCAAAAGATGCTTGA 801 0.4719 MCGGTGTINLTGYSTKAGSINGHVTITIRFSHGSRSIDFFTRSTTVQVKLCKFATFFLSLARPLSGDGGRGKSPCFTSRPLCLGQIQSPDPILYPISVYVLIFMDPQNLLFSRENPRPPTFSTTSVVSSKPTIPSEIAQKPSPSILVGRFKALLKEREDEYRASSGDDVPVPPPSTEEIVQIYQLLLSDLTCNLKPIITDLTIIAELQLEHARGIADAICARILERSILPYVKLIFNSAGDEVYGLFFFFFVNFVNPVMYQDPKDA 266
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1542 266 ProSiteProfiles CID domain profile. 175 266 IPR006569 -
Dere10g1542 266 Gene3D - 173 236 IPR008942 -
Dere10g1542 266 SUPERFAMILY ENTH/VHS domain 174 234 IPR008942 -
Dere10g1542 266 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 149 225 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere10g1542 Dere-ChrDere10 27525129 27527756 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1542 104 248 C2H2 Transcription Factor Family AT4G04885 45.033 6.77e-24 99.0