Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1521 ATGATGCAGCCTGGTCCTGGCATGGCTCCCCCAACCATGGTCCAACAGCCTAACCAGCTGTACCAGCAGCAACAACAACCCTACATGATGATGCCTCCGCAGGCTCAGGCTCCGCCGATGTGGGCACCGTCAGCTCAGCCACCGCCGCAGGCGGTTGCTCCGCCTCCAACGACTCAAGCCGTCCAGCCCACTAGCGTGGATGAGGTCCGTACTCTTTGGATCGGTGATTTGCAGTACTGGATGGACGAGAACTATTTGTACAGTTGTTTTGCACATACAGGCGAGGTGGCCTCTGTGAAAGTTATACGAAATAAGCAAAATAATCAATCGGAAGGTTACGGGTTTATTGAGTTTTTCACTCGCGCAGCTGCTGATAGAATACTTCAAACATTTAATGGCACCATCATGCCCAATGGTGGGCAAAGCTTTAGGTTGAACTGGGCTACTTTTAGTGCAGGTGAGAGGCGGCACGATGATACTCCAGATTACACAATATTTGTTGGAGATTTGGCTGCAGATGTTACAGATTACCTGCTTCAGGAGACATTTAGGGCTAGGTATTCCTCGGTTAAAGGTGCAAAAGTTGTGATTGATAGACTCACTGGGAGGACCAAGGGTTATGGTTTTGTTAGGTTTGGTGATGAGAGTGAACAAATACGAGCTATGACCGAGATGCAAGGGTTATTGTGTTCAACAAGACCCATGCGGATTGGACCAGCCACTAACAAAACGCCTGGCACCCAGGCAAAAGCTTCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGGAATTTGGATCCTAATGTTACAGATGATCATCTGAGGCAAGTCTTTGGCCAATATGGGGAGTTAGTACATGTTAAGATTCCAGCAGGCAAGCGGTGCGGGTTTGTCCAATTCGCTGACAGGAGCTGTGCAGAAGAGGCACTGAGGATGTTAAATGGAACACTGTTGGGTGGGCAGAATGTTCGTCTCTCATGGGGCCGTAGTCCTTCAAACAAACAGACTCAGCCAGATTCAAACCAGTGGAATGGTGGGTATTACGGATACACTCAGGGATATGAGAATTATGGATATGCTCCGGCTGCTGCTGCTGCTGCAACACAGGACCCCAACGTGTATGGCAGCTATCCTGGGTATGCCAACTACCAACCACCGCAGCAACAGCAGCAACTAGGATATAGTTGA 1218 0.4869 MMQPGPGMAPPTMVQQPNQLYQQQQQPYMMMPPQAQAPPMWAPSAQPPPQAVAPPPTTQAVQPTSVDEVRTLWIGDLQYWMDENYLYSCFAHTGEVASVKVIRNKQNNQSEGYGFIEFFTRAAADRILQTFNGTIMPNGGQSFRLNWATFSAGERRHDDTPDYTIFVGDLAADVTDYLLQETFRARYSSVKGAKVVIDRLTGRTKGYGFVRFGDESEQIRAMTEMQGLLCSTRPMRIGPATNKTPGTQAKASYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQTQPDSNQWNGGYYGYTQGYENYGYAPAAAAAATQDPNVYGSYPGYANYQPPQQQQQLGYS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1521 405 SUPERFAMILY RNA-binding domain, RBD 152 255 IPR035979 GO:0003676
Dere10g1521 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 150 IPR000504 GO:0003723
Dere10g1521 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 333 IPR000504 GO:0003723
Dere10g1521 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 229 IPR000504 GO:0003723
Dere10g1521 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 137 IPR000504 GO:0003723
Dere10g1521 405 Gene3D - 162 238 IPR012677 -
Dere10g1521 405 MobiDBLite consensus disorder prediction 241 267 - -
Dere10g1521 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 62 344 - -
Dere10g1521 405 MobiDBLite consensus disorder prediction 32 64 - -
Dere10g1521 405 Gene3D - 244 351 IPR012677 -
Dere10g1521 405 SMART rrm1_1 71 146 IPR000504 GO:0003723
Dere10g1521 405 SMART rrm1_1 269 336 IPR000504 GO:0003723
Dere10g1521 405 SMART rrm1_1 164 238 IPR000504 GO:0003723
Dere10g1521 405 Gene3D - 9 158 IPR012677 -
Dere10g1521 405 MobiDBLite consensus disorder prediction 32 56 - -
Dere10g1521 405 FunFam Polyadenylate-binding protein RBP45C 155 246 - -
Dere10g1521 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 340 IPR000504 GO:0003723
Dere10g1521 405 SUPERFAMILY RNA-binding domain, RBD 51 149 IPR035979 GO:0003676
Dere10g1521 405 CDD RRM1_SECp43_like 71 151 - -
Dere10g1521 405 CDD RRM2_SECp43_like 162 241 - -
Dere10g1521 405 FunFam Polyadenylate-binding protein RBP45 10 154 - -
Dere10g1521 405 SUPERFAMILY RNA-binding domain, RBD 254 368 IPR035979 GO:0003676
Dere10g1521 405 FunFam Polyadenylate-binding protein RBP45C 247 371 - -
Dere10g1521 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 242 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1521 Dere-ChrDere10 27272582 27276405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1521 164 357 Eukaryotic Initiation Factors Gene Family AT2G23350 23.618 1.02e-09 58.5