Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1511 ATGGGTTGTCATAGTAGCAAGGAGAAAAGATCAAAGCCAGGATTTAGTGGTCATGGATCAGCCACGGGTAGTGTTAGTAATACCCATCAAAGTTATAACACTGTTCAGCCTCCTCCTACTCAAACCCAAACTCAGATTCAAACTTCAGAATCCAAACCCCAGCCACAGCCGCCGTCGTCGCAGCCGCCGGCGGTCGTCCCTGCAAAACCCACTGCTCAGCATGTCAGACCCGCGCAGCAGAAGCCAGAAGCTACGATTCTGGGTAAGCCTATTGAAGATGTTAAGAAATTCTACACTCTGGGCAAAGAACTTGGGAGAGGGCAGTTTGGGATTACCTATTTGTGTACCGAGAATTCGACTGGCCACACTTATGCGTGCAAATCCATATTGAAGAGGAAGCTTGTGTCTAAAGCGGATAAGGAAGATATGAAGAGGGAGATTCAGATTATGCAGCATTTATCTGGGCAACCCAACATTGTGGAGTTTAAGGGTGCTTATGAAGATAGATATTCTGTTCACCTCATAATGGAGCTATGTGCTGGTGGGGAGCTATTTGATCGAATCATAGCTCAGGGTCAATATTCAGAGAGAGCTGCTGCTTCAATTTGCAGAGCCATTGTTAATGTTGTGCACATTTGCCACTTCATGGGGGTGATGCATCGCGATCTGAAGCCTGAAAATTTCTTGCTCTCTAGCAAGGATCAGGGAGCAACGCTCAAGGCTACTGATTTTGGACTGTCTGTATTCATTGAAGAAGGGAAGGTCTACCGTGATATGGTAGGTAGTGCCTATTATGTTGCTCCTGAGGTATTGCGACGTAGTTATGGAAAAGAAATAGATATTTGGAGTGCAGGCATCATATTGTATATTCTCCTTAGTGGTGTACCACCTTTTTGGGCTGAAAACGAGAAGGGAATATTTGATGCCATATTGGAAGGCAAAATTGATTTCGAAAGTCAACCGTGGCCATCAATATCAGATAGTGCTAAAGATTTAGTCAGGAAGATGTTGACACAGGACCCAAATAAGCGAATTACTTCTGCACAAGTCCTTGAACACCCATGGATCAGGGAAGGTGGAGAGGCATCAGATAAGCCGATTGATAGTGCAGTTCTGTCAAGAATGAAGCAATTCAGGGCAATGAATAAGCTGAAGAAGCTCGCATTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAGATTAAAGGTCTCAAAGCAATGTTCACCAATATGGACACTGACAATAGCGGCACTATTACCTATGAAGAACTGAAGACAGGCTTGGCCAAGATTGGATCACAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGAAGCTGCTGATGTTGATGGGAATGGATCGATCGATTATATTGAATTCATCTCAGCTACAATGCATAGGCACAGACTTGAACGAGATGAGCACTTATACAAAGCATTTCAGTATTTTGATAAGGATAACAGTGGTTATATTACTAGAGATGAACTGGAGACTGCTATGACAGAGCATGGAATGGGCGACGAAGCGACTATTAAGGAAATCATATCTGAGGTGGATACAGATAATGATGGGAGAATAAACTATGAGGAATTTTGCACAATGATGAGGAGTGGAATGCAGCATCAAGGACAACTTTTTTAA 1641 0.4339 MGCHSSKEKRSKPGFSGHGSATGSVSNTHQSYNTVQPPPTQTQTQIQTSESKPQPQPPSSQPPAVVPAKPTAQHVRPAQQKPEATILGKPIEDVKKFYTLGKELGRGQFGITYLCTENSTGHTYACKSILKRKLVSKADKEDMKREIQIMQHLSGQPNIVEFKGAYEDRYSVHLIMELCAGGELFDRIIAQGQYSERAAASICRAIVNVVHICHFMGVMHRDLKPENFLLSSKDQGATLKATDFGLSVFIEEGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAENEKGIFDAILEGKIDFESQPWPSISDSAKDLVRKMLTQDPNKRITSAQVLEHPWIREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFTNMDTDNSGTITYEELKTGLAKIGSQLSEAEVKQLMEAADVDGNGSIDYIEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELETAMTEHGMGDEATIKEIISEVDTDNDGRINYEEFCTMMRSGMQHQGQLF 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1511 546 ProSiteProfiles Protein kinase domain profile. 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1511 546 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Dere10g1511 546 ProSiteProfiles EF-hand calcium-binding domain profile. 507 541 IPR002048 GO:0005509
Dere10g1511 546 Gene3D Transferase(Phosphotransferase) domain 1 184 363 - -
Dere10g1511 546 MobiDBLite consensus disorder prediction 17 54 - -
Dere10g1511 546 SUPERFAMILY EF-hand 395 535 IPR011992 -
Dere10g1511 546 ProSitePatterns Protein kinases ATP-binding region signature. 104 131 IPR017441 GO:0005524
Dere10g1511 546 SMART efh_1 439 467 IPR002048 GO:0005509
Dere10g1511 546 SMART efh_1 510 538 IPR002048 GO:0005509
Dere10g1511 546 SMART efh_1 403 431 IPR002048 GO:0005509
Dere10g1511 546 SMART efh_1 475 503 IPR002048 GO:0005509
Dere10g1511 546 FunFam Calcium-dependent protein kinase 1 100 183 - -
Dere10g1511 546 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Dere10g1511 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 92 531 - -
Dere10g1511 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Dere10g1511 546 ProSitePatterns EF-hand calcium-binding domain. 519 531 IPR018247 -
Dere10g1511 546 CDD EFh 478 536 IPR002048 GO:0005509
Dere10g1511 546 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Dere10g1511 546 CDD STKc_CAMK 97 355 - -
Dere10g1511 546 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Dere10g1511 546 FunFam calcium-dependent protein kinase 1 184 363 - -
Dere10g1511 546 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Dere10g1511 546 Gene3D - 364 542 - -
Dere10g1511 546 MobiDBLite consensus disorder prediction 1 84 - -
Dere10g1511 546 FunFam Calcium-dependent protein kinase 1 364 539 - -
Dere10g1511 546 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Dere10g1511 546 SUPERFAMILY Protein kinase-like (PK-like) 84 377 IPR011009 -
Dere10g1511 546 Gene3D Phosphorylase Kinase; domain 1 100 183 - -
Dere10g1511 546 Pfam Protein kinase domain 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1511 546 SMART serkin_6 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1511 546 Pfam EF-hand domain pair 474 536 IPR002048 GO:0005509
Dere10g1511 546 Pfam EF-hand domain pair 404 464 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1511 Dere-ChrDere10 27202916 27207445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1511 1 546 EF-hand Containing Proteins AT4G04720 74.499 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere10g1511 Pkinase 1.8e-73 CL0016