Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1478 ATGGCCAAATCATTACCACTCATCTTCCTTTCGATATCCTTCCTACCACTTCTTGCTTCAAGCTTATATGATTACACTCCAAAGAACCTCATCCTCAACAAGATAGACTCTTGCTGGAGAGCCAAATCAAACTGGGCATCGAATCGGCAAGCCCTAGCTGACTGTGCTGTTGGGTTTGGCAAAGACGCCATTGGAGGAAAGTATGGGGCTATATATGAGGTCACTGATCCCTCCGATGACCCTGTGAACCCTAAACCAGGGACACTTCGCTATGGTGTGATCCAGAAACAGCCTCTTTGGATAATATTCGAGAAGGACATGGTTATTAGACTCAAGAATGAGCTTATAGTGAATAGCTATAAGACCATCGATGGCAGAGGAGCCAAAGTGGAGATTGCTAATGGGCCTTGCATTACCGTTCAAGGTGTTAGCCATGTTATTATACATGGGATTAGCATCCATGATTGTAAACCAGGAAAAGCTGGGATGGTAAGGAGCAGTAGTGATCATGTAGGGCGTCGTCGCGGGTCGGACGGAGACGCCATTAGCATATTTGGTTCCTCCAATGTTTGGATTGACCATTGCTTCTTTGCTCGCTGCGTCGATGGTCTCATTGATATTATTCATGCCTCCACCGCCGTCACCATTTCTAACAGTTACTTCACACAGCATGATAAAGTGATGCTGCTAGGACACAACGATGGATACACAGCAGATAAGATAATGAAAGTAACAATAGCCTTCAACCATTTTGCTAGTGGCCTATATGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCACGTGGTCAACAACAAATATGATGGCTGGAAGATGTATGCCATCGGAGGCAGTGCTAACCCTACCATTCTGAGTGAAGGCAACTACTATATTGCTCCGAGTAACTACGGTGGAAAACAGGTTACAAAGAGGGAAGTGAAGAAAAATTGGCAGAATTGGAAATGGAGGTCTTCTAAGGATGCATTTCTCAATGGTGCCTATTTTGTTCCCTCTGGGTATGGAAGTTGTGACCCATACTATTCAAGAGCTCAATCTTTTGTTGCTGCTCCAGCTTCCTTGGTGCCTGCGTTAACTCTCAATGCAGGTCCTCTGAATTGTGTTGTTGGGAAAGCATGCTAG 1140 0.45 MAKSLPLIFLSISFLPLLASSLYDYTPKNLILNKIDSCWRAKSNWASNRQALADCAVGFGKDAIGGKYGAIYEVTDPSDDPVNPKPGTLRYGVIQKQPLWIIFEKDMVIRLKNELIVNSYKTIDGRGAKVEIANGPCITVQGVSHVIIHGISIHDCKPGKAGMVRSSSDHVGRRRGSDGDAISIFGSSNVWIDHCFFARCVDGLIDIIHASTAVTISNSYFTQHDKVMLLGHNDGYTADKIMKVTIAFNHFASGLYERMPRVRFGYAHVVNNKYDGWKMYAIGGSANPTILSEGNYYIAPSNYGGKQVTKREVKKNWQNWKWRSSKDAFLNGAYFVPSGYGSCDPYYSRAQSFVAAPASLVPALTLNAGPLNCVVGKAC 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1478 379 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
Dere10g1478 379 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Dere10g1478 379 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Dere10g1478 379 PRINTS Pollen allergen Amb family signature 320 344 IPR018082 -
Dere10g1478 379 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
Dere10g1478 379 PRINTS Pollen allergen Amb family signature 350 373 IPR018082 -
Dere10g1478 379 PRINTS Pollen allergen Amb family signature 78 103 IPR018082 -
Dere10g1478 379 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Dere10g1478 379 SUPERFAMILY Pectin lyase-like 33 370 IPR011050 -
Dere10g1478 379 SMART amb_all 106 303 IPR002022 -
Dere10g1478 379 Gene3D - 32 372 IPR012334 -
Dere10g1478 379 PANTHER PECTATE LYASE 18-RELATED 31 377 IPR045032 GO:0030570
Dere10g1478 379 Pfam Pectate lyase 112 297 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1478 Dere-ChrDere10 26847799 26851188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1478 5 379 Polysaccharide Lyase AT1G11920 69.149 0.0 545