LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere10g1477	ATGGCTACCTTAACCCCACAAATCCTATGCCTTTCATGCTTTCTTTTTTCATTCTGTGCTTCAACCTTGTACGCAGATTCAACAAACAAATATCTCACAACTCCCACACCCACCATTTCAAGCTACATCCCCGAAACTCCTAAGAATCTCATCCTCAACAAGATAGACTCTTGCTGGAGAGCCAAATCAGACTGGGAATCAAATCGGCAAGCCCTAGCTGACTGTGCTGTTGGGTTCGGCAAAGACGCCATTGGAGGAAAATATGGGGCTATATATGAGGTCATTGATCCCTCCGATGACCCCGTGAACCCTAAACCAGGGACACTTCGCTATGGTGTGATCCAAACACAGCCTCTTTGGATAATATTCGCGAAGGACATGGTTATCACACTCAAGAATGAGCTTATAGTGAATAGCTATAAGACCATTGATGGCAGAGGAGCCAAAGTGGAGATTGCTAATGGACCTTGTATTACCATTCAAGGTGTTAGCCATGTTATCATTCATGGGATTAGCATCCATGATTGTAAACCAGCAAAAGCAGGCATGGTTAGGAGTAGTAATGAGCACGTTGGGCACCGTGAAGGCTCTGATGGAGATGCCATTAGCATATTTGCTTCTTCCAATATTTGGATCGACCATTGCTTCTTTGCTCGCTGTACCGATGGCCTCATTGATGTCATTCATTCCTCAACGTCAGTCACTATCTCCAACAATTACTTCACCCAGCATGACAAAGTGATGCTGCTAGGACACAGCGATGAATATACAGCTGATAGAACAATGAAAGTAACAGTAGCCTTCAACCGATTTGCCAGTGGCCTAATAGAAAGAATGCCGAGGGTAAGATTTGGTTATGCTCATGTGGTGAACAACCAATACGACGAGTGGCTTATGTATGCCATAGGTGGCAGTGCCGACCCTACCATTTTTAGTGAAAGAAACTACTTTATAGCTCCAAGCAGTGAAGCAGCAAAACAGGTTACCAAGAGGGAAACCAGTAAGAACTGGAATAACTGGAAATGGAGGACGTATGGGGATGAATTCTTGAACGGTGCATATTTTATTCCGTCTGGGTATGGCAGTTGTACTCCATATTATTCAACTGCACAATCTTTTATTTCTGCACCTGCCTCCTTGGTGCCTCTTTTGACTCACAATGCTGGTCCACTTAATTGTATTGTTGGCAAAGCATGTTAA	1200	0.4392	MATLTPQILCLSCFLFSFCASTLYADSTNKYLTTPTPTISSYIPETPKNLILNKIDSCWRAKSDWESNRQALADCAVGFGKDAIGGKYGAIYEVIDPSDDPVNPKPGTLRYGVIQTQPLWIIFAKDMVITLKNELIVNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPAKAGMVRSSNEHVGHREGSDGDAISIFASSNIWIDHCFFARCTDGLIDVIHSSTSVTISNNYFTQHDKVMLLGHSDEYTADRTMKVTVAFNRFASGLIERMPRVRFGYAHVVNNQYDEWLMYAIGGSADPTIFSERNYFIAPSSEAAKQVTKRETSKNWNNWKWRTYGDEFLNGAYFIPSGYGSCTPYYSTAQSFISAPASLVPLLTHNAGPLNCIVGKAC	399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere10g1477	399	SUPERFAMILY	Pectin lyase-like	53	390	IPR011050	-
	Dere10g1477	399	PRINTS	Pollen allergen Amb family signature	198	219	IPR018082	-
	Dere10g1477	399	PRINTS	Pollen allergen Amb family signature	278	297	IPR018082	-
	Dere10g1477	399	PRINTS	Pollen allergen Amb family signature	340	364	IPR018082	-
	Dere10g1477	399	PRINTS	Pollen allergen Amb family signature	370	393	IPR018082	-
	Dere10g1477	399	PRINTS	Pollen allergen Amb family signature	75	92	IPR018082	-
	Dere10g1477	399	PRINTS	Pollen allergen Amb family signature	300	319	IPR018082	-
	Dere10g1477	399	PRINTS	Pollen allergen Amb family signature	98	123	IPR018082	-
	Dere10g1477	399	PRINTS	Pollen allergen Amb family signature	134	150	IPR018082	-
	Dere10g1477	399	PANTHER	PECTATE LYASE 18-RELATED	47	397	IPR045032	GO:0030570
	Dere10g1477	399	SMART	amb_all	126	323	IPR002022	-
	Dere10g1477	399	Pfam	Pectate lyase	132	317	IPR002022	-
	Dere10g1477	399	Gene3D	-	52	392	IPR012334	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere10g1477	Dere-ChrDere10	26842107	26843978	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere10g1477	8	399	Polysaccharide Lyase	AT4G22080	67.602	0.0	557