Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1461 ATGCTTAAGTTTGTGGAACTTCAAATGGTCAGTATGTCAGCCTTAATCTCCGGAAGGCTCCAACGTTCTTTTGGTTCCTTGTATTCAATAAGCCACCGTTTTTATTCAACAAATACTGGGTATCCGCAATGTCTTAGATCAAATGATATATACAACAGTTTATCTGGGGAAAGACTGATTTCTGCAGAACGTTCTGGCCTCCTATGGGTCAGATCATTGCTCCATTCTCATCGGCAGTTTTCAACTTCTATTTTAACTCCTGAATCTGGTGACGTTGCATTTCCCTCTCATTTATTGTCTAACTCTAATGTGCCTGCAGCTGCTTCTGAGCGTACCATAGGGCTTTATCAGGATCTTTTAATTCCAGTTACCAATTTCCATAATGAAGACAAGGGTTTTATGGTTTTAGCTGGTGATGTTTTTGATGTGCCTATTAGGAAGCATATTGTTCATCGTGTTGTTAGGTGGCAGCTTGCTAAACGGCAGCAGGGAACTCACTCAACAAAAACTATCAGTGAGGTCAGTGGGACTGGGAGAAAGCCTTGGCAACAGAAGGGAACTGGTAGAGCAAGGCATGGAACATTACGAGGGCCTCAGTTCAGGGGTGGTGCCACTATGCATGGCCCTAAGCCCAGAAGCCATGCCTTCAAGCTCAATAAGAAGGTCCGCCGACTGGGGCTCAAGATTGCTCTGTCAGCTCGTGCAGCAGAAGGAAAGCTTCTTGTGTTTGATAATTTGGAGGTTCCCACCCACAAAACCAAGAATATTGTGAGCTATGTCAAGAAAATGGAAAACACCAAGAAACTTTTGCTCGTAGATGGTGGTCCCATTGAAGAAAAGTTGAAGTTGGCTACGCAAAATCTACATTATGTTAACTTACTTCCCTCCATTGGTTTGAATGTCTACAGCATTTTACTGCATGACACATTGGTGATGTCCCGTGATGCTGTAAACAGAATTGTTGAGCGAATGCACACTCCAATAAACCTAATAAGTAACATCTACAGAATGGCGGTGCCAACAATTTGTACTGTTATATGACCGTATTGTATCGATTCTCGAATCACTGGTAAACTCAGGCGAAGCGTCACACTCACTCGTGCCTCTCACAACACAAGGTCTTCAACTTCAACCTTAGGGTTCCTCTGTTGTTCTTCTTCTTCTCCCCAAAATCTTAGGGCTTACAATTTATACATTTCCAATCTCATGGCGAAAACTAGACCGGGCAGAAAGGACTTGGACTCTTATACCATTAGAGGCACCAACAAGATCGTCAGAGCTGGAGACTGTGTACTGATGAGACCTTCCGACACCAGCAAGCCCCCGTACGTGGCGCGCGTGGAGAAGATCGAACAGGACAATAGGAACAACGTTAAAGTCCGTGTGAGGTGGTATTATCGGCCAGAAGAATCGATTGGTGGTCGCAGGCAATTCCATGGAGCTAAAGAACTGTTCTTGTCGGATCATTATGACGTCCAGAGTGCTCACACCATAGAAGGGAAGTGTATCGTACACTCTTTCAAAAACTACACAAAGCTTGAGAATGTTGGAGCTGAAGATTACTACTGTAGATTCGAGTACAAGGCTGCTACCGGGGCATTTACGCCGGACCGTGTTGCTGTGTATTGCAAATGCGAGATGCCTTACAACCCGGACGACCTCATGGTGCAATGTGAGGGGTGCAAAGATTGGTATCATCCTGCTTGCGTGGGCATGACTATTGAAGAAGCAAAAAAACTGGACCATTTTGTATGTTCTGAATGTTCATCTGATGATGACATGAAAAAACCGCAAGCTACATTTTCTGCATCACCAACAGCTGATGGCAAGGTGGAGCCCAAGCGAAGGAAGAGATGA 1857 0.4464 MLKFVELQMVSMSALISGRLQRSFGSLYSISHRFYSTNTGYPQCLRSNDIYNSLSGERLISAERSGLLWVRSLLHSHRQFSTSILTPESGDVAFPSHLLSNSNVPAAASERTIGLYQDLLIPVTNFHNEDKGFMVLAGDVFDVPIRKHIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWQQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFDNLEVPTHKTKNIVSYVKKMENTKKLLLVDGGPIEEKLKLATQNLHYVNLLPSIGLNVYSILLHDTLVMSRDAVNRIVERMHTPINLISNIYRMAVPTICTVIXPYCIDSRITGKLRRSVTLTRASHNTRSSTSTLGFLCCSSSSPQNLRAYNLYISNLMAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFSASPTADGKVEPKRRKR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1461 618 SUPERFAMILY FYVE/PHD zinc finger 534 592 IPR011011 -
Dere10g1461 618 MobiDBLite consensus disorder prediction 589 618 - -
Dere10g1461 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 535 604 IPR013083 -
Dere10g1461 618 Pfam PHD-finger 542 590 IPR019787 -
Dere10g1461 618 SUPERFAMILY Ribosomal protein L4 121 324 IPR023574 GO:0003735|GO:0005840|GO:0006412
Dere10g1461 618 ProSitePatterns Zinc finger PHD-type signature. 543 588 IPR019786 -
Dere10g1461 618 CDD BAH_BAHCC1 424 558 - -
Dere10g1461 618 FunFam 50S ribosomal protein L4 102 330 - -
Dere10g1461 618 ProSiteProfiles BAH domain profile. 423 538 IPR001025 GO:0003682
Dere10g1461 618 SMART BAH_4 423 538 IPR001025 GO:0003682
Dere10g1461 618 ProSiteProfiles Zinc finger PHD-type profile. 540 591 IPR019787 -
Dere10g1461 618 MobiDBLite consensus disorder prediction 171 213 - -
Dere10g1461 618 FunFam Chromatin remodeling protein EBS 398 534 - -
Dere10g1461 618 Hamap 50S ribosomal protein L4 [rplD]. 126 325 IPR013005 -
Dere10g1461 618 Gene3D - 105 340 IPR023574 GO:0003735|GO:0005840|GO:0006412
Dere10g1461 618 Pfam BAH domain 425 537 IPR001025 GO:0003682
Dere10g1461 618 SMART PHD_3 542 589 IPR001965 -
Dere10g1461 618 Pfam Ribosomal protein L4/L1 family 136 322 IPR002136 GO:0003735|GO:0005840|GO:0006412
Dere10g1461 618 Gene3D - 383 534 IPR043151 -
Dere10g1461 618 NCBIfam 50S ribosomal protein L4 136 321 IPR013005 -
Dere10g1461 618 PANTHER OS08G0421900 PROTEIN 403 610 - -
Dere10g1461 618 FunFam Bromo-adjacent homology (BAH) domain-containing protein 535 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1461 Dere-ChrDere10 26667457 26678345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1461 443 540 Core DNA Replication Machinery Family AT4G14700 31.313 8.44e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere10g1461 Ribosomal_L4 1.3e-65 No_clan