Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1460 ATGGAGGAGAGTTCTAACGGGATGGCTCTTGTGGGAGAGAACAGTAGTAGTAGTGGTGGCCTATTTTGTCCTCTTCCAATGATGATGAATATGCCTTTAGTGACATCTCATCACCATCATAGTGGTCATCATCAACCATTAGTTAGTCCTAATGCTAATGCACTCGGTACTAACACCAGTAGTACTCTCTTCCTCCCCACACCTTGCACCAATAATAATAGCACCTCCTCCTCTATCTTGCTTCAAAATAACACCAATATAAACAGCAACAACACTGGATTAAGCTTTGGCTGTTATTTCATGGACACCGACACCAATATTAACAACAACAATGGTAGCTCCTCTTCTTGTTCTTCTATGAAAGCCAAGATCATGGCTCATCCTCACTACCCTCGCCTCCTCGCTGCTTACATCAGTTGTCAAAAGGTGGGAGCACCGCCGGAAGTGGTGGCGAGGCTAGATGAAGCGTGTGCTGCTGCGGCGGCGGCAATGGGCGGCAACGGTGGTGGGTCTGGCTGCACCGGGGAAGATCCGGCGTTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTGACAAAGTATGAGCAAGAGCTTTCCAAACCCTTCAAGGAAGCTATGTTCTTCCTTCAGAATATGGAGCGTCAGTTTAAAGCTCTCACTGTTGATTCTCCAATCGATTTCGCTTGTAATAACACTGATAGAAATGAATCATCTGAAGATGATATTGATCTGCACAACAACAAGAGCGTGATTGATCCACAGGCCGAGGATCAAGAATTGAAGGGTCAGCTTCTTAGAAAGTACAGTGGATACTTGGGCAGTCTAAAGCAGGAATTCATGAAGAAGAGGAAAAAGGGCAAGCTGCCTAAAGAAGCAAGGCAACAGTTACTTGATTGGTGGAGCAGACACTACAAATGGCCCTACCCTTCTGAATCGCAGAAGCTGGCTCTTGCGGAATCGACAGGTCTGGATCAGAAGCAAATAAACAACTGGTTCATTAACCAAAGAAAACGTCACTGGAAGCCTTCAGATGACATGCAATTTGTGGTGATGGATCCAATGCATCCTCACTATTTCATGGACAATGTTCTGGGCAATCCCTATCCTATGGATTTCTCCCACACGATGCTTTGA 1134 0.4594 MEESSNGMALVGENSSSSGGLFCPLPMMMNMPLVTSHHHHSGHHQPLVSPNANALGTNTSSTLFLPTPCTNNNSTSSSILLQNNTNINSNNTGLSFGCYFMDTDTNINNNNGSSSSCSSMKAKIMAHPHYPRLLAAYISCQKVGAPPEVVARLDEACAAAAAAMGGNGGGSGCTGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMFFLQNMERQFKALTVDSPIDFACNNTDRNESSEDDIDLHNNKSVIDPQAEDQELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSDDMQFVVMDPMHPHYFMDNVLGNPYPMDFSHTML 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1460 377 CDD homeodomain 291 343 IPR001356 GO:0003677
Dere10g1460 377 Pfam KNOX2 domain 174 220 IPR005541 GO:0003677|GO:0005634
Dere10g1460 377 SMART KNOX1_2 118 162 IPR005540 GO:0003677|GO:0005634
Dere10g1460 377 SMART ELK_2 259 280 IPR005539 GO:0003677
Dere10g1460 377 ProSitePatterns 'Homeobox' domain signature. 317 340 IPR017970 GO:0000981|GO:0006355
Dere10g1460 377 Pfam ELK domain 259 280 IPR005539 GO:0003677
Dere10g1460 377 SMART HOX_1 281 346 IPR001356 GO:0003677
Dere10g1460 377 SUPERFAMILY Homeodomain-like 281 357 IPR009057 -
Dere10g1460 377 ProSiteProfiles ELK domain profile. 259 279 IPR005539 GO:0003677
Dere10g1460 377 Pfam Homeobox KN domain 299 338 IPR008422 GO:0003677|GO:0006355
Dere10g1460 377 SMART KNOX2_2 170 221 IPR005541 GO:0003677|GO:0005634
Dere10g1460 377 ProSiteProfiles 'Homeobox' domain profile. 279 342 IPR001356 GO:0003677
Dere10g1460 377 FunFam Homeobox protein knotted-1-like 2 284 346 - -
Dere10g1460 377 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 348 - -
Dere10g1460 377 Pfam KNOX1 domain 120 158 IPR005540 GO:0003677|GO:0005634
Dere10g1460 377 Gene3D - 284 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1460 Dere-ChrDere10 26658643 26664452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1460 120 377 Homeobox Transcription Factor Family AT1G62360 76.981 2.13e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere10g1460 KNOX2 1.4e-20 No_clan