Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere10g1452 | ATGAGTCAACTCGGTGTAATATTGCAGGAATCGCTTCAGAGAGAGAGGGAGGGAAGAACGATTCTGGGTTTGTTAACGGAGCAAATGGAATCTGCGAACAATAGTAATAACGGAGAGCCTCGAAGGAGACGGAGTTTAAAAGAACGGCTAAGATTCACCGGAATGGGGTGCTGCGGGGCCGCATGGGGTTCCCGTCCGACCACCGTAAGGCACGAAGGGGGAGAAGAAGACGAACGGCGGCAGCAGCAGCAACCACTCCAAGAAACGAATCCGGGGCAAGGATCAAGTTCATCTGACCCAGATTGCGTGAGCCCGATTCCAGCGGGTTCGGGTATGAACCTGGCGGCGGCGTTGGCGGCGGAGCGTCAATTTCGGGGGTCACAAGAACCGGAAGCGGGGAGTCGGGGATCCGCCGGTAACAATTTGCGGCGGGGAGGGACGGCGGCGCCGGGGACGCCGTGGAAGATGTCGCTGATGAGGCTGCTCGAGGAGACGGAGGGTGGTGACGGCGAAGTGAAAGTGACGGAGACGGAGAAAGCAGGTTTGGGGAATGATACGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCATTTATCCCATGTGGTCACACTTTTTGCAGAGTGTGCTCCAGAGAGCTGTGGCTGAACCGAGGGACTTGTCCCCTCTGCAACCGTTCGATCCTCGAGATTCTCGACATTTTCTGA | 711 | 0.5724 | MSQLGVILQESLQREREGRTILGLLTEQMESANNSNNGEPRRRRSLKERLRFTGMGCCGAAWGSRPTTVRHEGGEEDERRQQQQPLQETNPGQGSSSSDPDCVSPIPAGSGMNLAAALAAERQFRGSQEPEAGSRGSAGNNLRRGGTAAPGTPWKMSLMRLLEETEGGDGEVKVTETEKAGLGNDTVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGTCPLCNRSILEILDIF | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere10g1452 | 236 | PANTHER | OS01G0917900 PROTEIN | 5 | 236 | - | - | |
| Dere10g1452 | 236 | MobiDBLite | consensus disorder prediction | 61 | 109 | - | - | |
| Dere10g1452 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 236 | IPR013083 | - | |
| Dere10g1452 | 236 | MobiDBLite | consensus disorder prediction | 122 | 153 | - | - | |
| Dere10g1452 | 236 | SMART | ring_2 | 188 | 225 | IPR001841 | - | |
| Dere10g1452 | 236 | SUPERFAMILY | RING/U-box | 177 | 233 | - | - | |
| Dere10g1452 | 236 | CDD | RING-HC | 188 | 225 | - | - | |
| Dere10g1452 | 236 | MobiDBLite | consensus disorder prediction | 69 | 83 | - | - | |
| Dere10g1452 | 236 | Pfam | Zinc finger, C3HC4 type (RING finger) | 185 | 230 | - | - | |
| Dere10g1452 | 236 | ProSiteProfiles | Zinc finger RING-type profile. | 188 | 226 | IPR001841 | - | |
| Dere10g1452 | 236 | MobiDBLite | consensus disorder prediction | 84 | 103 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere10g1452 | Dere-ChrDere10 | 26485827 | 26486537 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere10g1452 | 21 | 236 | C3H Transcription Factor Family | AT4G22250 | 48.908 | 1.07e-55 | 175 |