Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1447 ATGGGGAAATCCGGGGGTAGAAAAAAGAAGGGTGTTTCAAGCCAAGTTATTGCTGACAATTCAGCACCAAGTGCTAATGGTGGTGTGGATTTGGACTCTTCAATCTTTTTGAAAAGAGCCCACGAGCTCAAGGAAGAAGGGAATAAGAGGTTTCAGAATAAGGACTATGCTGGTGCTCTTGAACAGTATGAGAATGCTCTTCGGCTAACCCCCAAGACCCATCCTGACAGAGCGGTTTTTCACAGCAACAGAGCAGCATGCTTGATGCAAATGAAGCCCATAGATTATGAAACTGTGATTGCTGAGTGCACCATGGCCCTGCAGGTCCAGCCCCAATTTGTCCGGGCACTTCTACGTAGGGCTCGGGCATTTGAGGCTATAGGGAAGTATGAAATGGCCATGCAGGACGTGCAAGTTTTATTGGGAGCTGACCCTAATCATCGGGATGCTCTGGAGATTGCCCAGAGACTGAGGACAGCATTGGGACCTCGCCAGGAAGCCCAGCAGGATCTTCAGAGTCGCCCCTCCCCTGCTGCTCTTGGTGCCTCTGCAGTCCGTGGTGCACCTATTGCTGGTTTAGGGCCATGTTTACCAGCCAGACCAGTGCCAAAAAAGGTAGCAAACTCAGCAATTGGATCAGTTGCCGCAGTTAACAGTAAGCCAGAGAAGTCCCAATCAACTTTACTAACTGAAAATGGTCCTGAGACCAAGTCTCAAATGCCAAAACTTGTGTTGAGGCCTACAAATGGTTCAGCTAGATCACCAAACCCAAGAAAAGAGAACCAGAAGGAACTGTTATCTCATTCATCAACTGCTCATGGACAGCATGTAGACGTTGCAATTCGGTGGAGGCCATTGAAACTTGTTTATGATCATGACATCAGGCTTGCTCAGATGCCAGTGAATTGCAATTTTAGGGTACTAAGAGATATAGTGAGTAAACGATTTCCATCATCAAAGTCAGTTCTGATCAAGTATAAGGATAGTGATGGTGATTTGGTGACTATAACTTCTACTGATGAACTCAGATTGGCAGAGTCTAGTGCCGATAGCCATCTTATTAAGGAACCTGAAGCAGATAAAAGTGATTCAGTTGGGATGTTGAGACTTCATATTGTTGAAGTTAGTCCTGAGCAGGAGCCTCCGTTACCGGAAGAAGAAGACGTAAAACCTGTTGAGAGTGAAGGGATGAGGGGAGATGAGAGTGGGTCGTATACTTCTGTCAGTGAATCGGTACCAGAAGCCCCTGATACTGAGGTTGATAAGATAGGGAAAGAAGCTCCAAAGGAAAAACCTGCAGCTACAGAAGATGGTGAATGCAAGGAAGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCTCATGTTGGTATTGATCCTGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCAGAGGCACTTGAGGAAACAGTAACTAGTGAGGAGGCTCAAGATCTCTTTGACAAGGCTGCTTCAAAGTTCCAGGAGGTAGCTGCTTTGGCATTCTTCAACTGGGGAAACATTCACATGTGTGCAGCTAGAAAACGCATTCCCTTGGATGAGTCAGGTGAGAAGGAGGCAGTGGCAGAACAGCTTCAAGTGGCTTATGGCTGGGTGAAGGAGAAATATTCCTTGGCAAGAAAGAAGTATGAGGAAGCACTTGTAATAAAACCAGACTTTTATGAGGGATTGCTGGCACTGGGACAGCAACAATTTGAAATGGCTAAACTTAATTGGTCATTTGCACTTGCTAAGAAGATGGATCTATCAGGCTGGGATGCTTCAGAGACACTTGAACTTTTTGACAGTGCAGAGGAGAAGATGAAAGCTGCAACTGATATGTGGGAAAAGCTGGAGGAACAGAGAGCAAATGAGCTAAAAGACCCAAGTGCAAGCAAGAAAGATGAGCTGTTGAGAAGAAGGAAAAAACAGGGTGGTGCTACTGAAGGTGACGCTCCCATTGCTGGTGGTCAGGGTGAAATATCTGCAGAAGAAGCTGCAGAGCAAGCAGCTGTCATGAGATCACAGATTCACCTCTTCTGGGGTAATATGCTATTTGAACGATCCCAGGTAGAATGCAAATTAGGGTTGGGTGGTTGGAAGAAAAATCTGGATACTGCTGTTGAGCGTTTTAAGCTTGCAGGAGCTTCCGAAGCTGACATTTCATTAGTTCTAAAGAATCATTGCTCTAATGGGGATGCAAAGGAAGGAGATGAGAAAAAGATTCAGAACCCACAATGTAAGAGTGGTGAAACAGATAAGACCAATGAGGCTAGTTAA 2304 0.4557 MGKSGGRKKKGVSSQVIADNSAPSANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYAGALEQYENALRLTPKTHPDRAVFHSNRAACLMQMKPIDYETVIAECTMALQVQPQFVRALLRRARAFEAIGKYEMAMQDVQVLLGADPNHRDALEIAQRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVPKKVANSAIGSVAAVNSKPEKSQSTLLTENGPETKSQMPKLVLRPTNGSARSPNPRKENQKELLSHSSTAHGQHVDVAIRWRPLKLVYDHDIRLAQMPVNCNFRVLRDIVSKRFPSSKSVLIKYKDSDGDLVTITSTDELRLAESSADSHLIKEPEADKSDSVGMLRLHIVEVSPEQEPPLPEEEDVKPVESEGMRGDESGSYTSVSESVPEAPDTEVDKIGKEAPKEKPAATEDGECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNIHMCAARKRIPLDESGEKEAVAEQLQVAYGWVKEKYSLARKKYEEALVIKPDFYEGLLALGQQQFEMAKLNWSFALAKKMDLSGWDASETLELFDSAEEKMKAATDMWEKLEEQRANELKDPSASKKDELLRRRKKQGGATEGDAPIAGGQGEISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGLGGWKKNLDTAVERFKLAGASEADISLVLKNHCSNGDAKEGDEKKIQNPQCKSGETDKTNEAS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1447 767 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Dere10g1447 767 SMART tpr_5 78 113 IPR019734 GO:0005515
Dere10g1447 767 SMART tpr_5 40 73 IPR019734 GO:0005515
Dere10g1447 767 SMART tpr_5 114 147 IPR019734 GO:0005515
Dere10g1447 767 MobiDBLite consensus disorder prediction 383 397 - -
Dere10g1447 767 MobiDBLite consensus disorder prediction 738 767 - -
Dere10g1447 767 Pfam PB1 domain 283 374 IPR000270 GO:0005515
Dere10g1447 767 MobiDBLite consensus disorder prediction 1 29 - -
Dere10g1447 767 SUPERFAMILY TPR-like 37 171 IPR011990 GO:0005515
Dere10g1447 767 MobiDBLite consensus disorder prediction 14 28 - -
Dere10g1447 767 SUPERFAMILY TPR-like 489 585 IPR011990 GO:0005515
Dere10g1447 767 CDD PB1 286 355 - -
Dere10g1447 767 Gene3D - 285 355 - -
Dere10g1447 767 Gene3D Tetratricopeptide repeat domain 37 169 IPR011990 GO:0005515
Dere10g1447 767 Coils Coil 609 629 - -
Dere10g1447 767 MobiDBLite consensus disorder prediction 217 256 - -
Dere10g1447 767 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Dere10g1447 767 PANTHER PROTEIN CLMP1 1 757 IPR044517 -
Dere10g1447 767 SUPERFAMILY CAD & PB1 domains 281 353 - -
Dere10g1447 767 MobiDBLite consensus disorder prediction 376 419 - -
Dere10g1447 767 MobiDBLite consensus disorder prediction 739 755 - -
Dere10g1447 767 MobiDBLite consensus disorder prediction 217 271 - -
Dere10g1447 767 ProSiteProfiles PB1 domain profile. 283 375 IPR000270 GO:0005515
Dere10g1447 767 MobiDBLite consensus disorder prediction 629 667 - -
Dere10g1447 767 SMART PB1_new 283 375 IPR000270 GO:0005515
Dere10g1447 767 MobiDBLite consensus disorder prediction 629 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1447 Dere-ChrDere10 26426134 26428437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1447 30 161 Calmodulin-binding Proteins AT3G25230 27.972 2.04e-10 62.0