Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1417 ATGTCTACAATTGACACTCCCGCCGATGATTGTGTTCACCAGCGCCGCCGCGGTGCTGGCACTGATCAAGATTCTCTATTTTCAAAGCGCAAGTTCGAAGACGAGGATGACGACGGCGACTCCGCCGAATTCTGCGACTTAGTCTCTGTCAGAATGAGGAAAGACGAACCCAAACCCGTCAATTCCTCTGCCGACATCTACTCTCACTCCGTCGACGCCTGCGTGTCAGACATTGATACTAGGTTTCCCGACTATGCTTCTTGCTCTTCCAGCTCCGAATCAACTCGCCCATCCTCGATGTTGCAGTTCTTCGTTCGAGGGGTTAGAACTATGGTTATGCAAGCTTGTCCACAAGATACTGTGAGATCGCTTCACGAGCGAATTCAAACGATTGTGGGTATTCCCGTGATTGAGCAGAGACTGATATATAGGGGGAAACAACTCCAGTGGGAGCAGACTCTGGCCGAGTGTTCAATTCAGAACGATGCCAGTCTTCAATTGGTTGGGCGTATGCGAAGCACGGAGCATCCACGTGCTTGGCAGATTATCAACGATATGGTTTCCCTTATTTACCGTCTCTGCACTGGTACTTATAATGGACAGGATGCTTCGTCAGTCATAAAGGGACTATTGAACAATTATCTGGGCATGGCTCCGAGGACGGAGGACAACGATTCTGCCTACAGGTATTTTCAGAGTTTTGTGTCATTGTCTGCTCCGGAGCTGCTGGTTATGCTCTATTTGTCACCCTACAGAGGTAATAAATGCTGCGCTGACAGTGCTATTAGGCATTTTTTGAGTGCTTGCCCTGCTTTGTCCAAGTCTTTGCATACTCAGTGTGCAAGAGTAGTGTTGGAATTCTGTACCTTGCTCAGAAGAGTGGGCTGTGAGGACCCTCTGTATATCTCTTGTCGGAGTAGTTTGGGGTTTCTATTGGAGACTGCTGATGTCTCATCTAGTTCTGAGAATTCTGAGGGATTAATTGTAATGCAAGATATTTTCCCCTTTATTGGTGAGCTTGCAAATTGCTTGTTGAGGGATTTGGATTTGTATATAGAGTTCTCCAATGAAAATGTAGGGTGGCCATTGGCTACTGATGTTCGGGATTTTAAAGCATTCTTACTTCCATTAAAATCTAAAATCATGGAGCAACGAGCTTTCAACGGATTATTTTCTTCTGTGACCGATGGAAAACGTCCCAAGAACCTCATACTCGGTGAAGAGATTAAAACCCTTCGTCTTATGTTTATGGAATTGTTAAAGAAAATGGATCAGTGCCTACAGATTATGGAGAAGTGCTTGGCTGCCAAGGAAAGTGTGGAAGTGGATCTTTATTTTGGATGGAATCATTATTATAGCGCCTTGATTGAATTCTATCACATTTCTAAGCTCTATGATGGCGCTGAAGAAGAACTTTTGTCAGTTTTGAGGTGTCGAAGAAATATATTCAGTCTACTAATTATTCGATATGCTAAGAGAAGTGATGATAACCAGTGGATTCTTGGACACAAGAGTCTGACGGATTTTGGATCCAGGAGGCATTTAGTTTTGATGATGTTCCCTGAGATAAAAGAAGACTATGAGGAATTGCATGAGATGCTCATCGACAGGTCTCAGTTGCTGGCAGAATCATTTGAGTATATATCACGAGCAGAGCCTGAATCTCTGCATGCTGGTCTTTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTGCGTGAATGGTTCCTCTTGGTATGCCAAGCAATTTTTAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGACCAAAGGAGATTTTTTCCTAATTCTGCTTCTAAGGTGCATCCTCAACACCTTGAGTACTTCGGCTTCTCAGGTCGAGTCATAGCATTAGCTTTGATGCATAAGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCCGGAAAGCAGATTACTTTACAAGATATACAGGATGCTGATCCTTTCTTGTATAGTAGCTACAAGCAGTTATTAGAGATGGATGCTGATTTCATTGATTCGGATGCTTTAGGACTGACCTTTGTTAGAGAGGTGGAGGAGTTAGGATACAGGAAAGTGGTTGAACTTTGCCCAGGTGGGGAAAGCCTTGCCGTAAATAGCAAGAACAGGGAGAAGTATGTTGATCTTCTTATACAGGATTGTTTTGTGACATCTATATCTGAGCAGGTGGCACATTTTGCCCAAGGTTTTGCCGATATTCTTAGCAACTCTTGTCGTAAGCAATTCTTTCTAAGTTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGAAGTCAGAATACCATTTCTGTTGAAGATTGGGAGGCACATACTGAATATAATGGTTATAAAGAAACTGATCCTCAGATAATATGGTTTTGGGAGATTGTTTCGAGAATGTCAGCAGAAGAAAGGAAGGTTCTTCTGTTTTTCTGGACATCTGTGAAGTATTTACCAGTGGAAGGCTTCCGTGGTTTAGCTTCTTGTCTCCACATTTACAAGTCCTCAGTGCCCATTGATCACCTTCCATCATCTCACACATGCTTTTACCAGCTGTGTTTACCGGCTTATCCATCTAGGGATGTCATGCACGATTGTCTGAGAATCATCATCCAAGAGCACATTGGCTGCAGCTTTGGTTGCAATGTCATCCATGGCTCTTCTGTCAAAGGTCTATATTGATTGAATGTTTGCCAATGCAAAGCAGAAAAACAAAGACATCATAACAAAAAAGAAAAAAAAAGTAAATTATCTTTTATTCAAACCTAG 2796 0.4274 MSTIDTPADDCVHQRRRGAGTDQDSLFSKRKFEDEDDDGDSAEFCDLVSVRMRKDEPKPVNSSADIYSHSVDACVSDIDTRFPDYASCSSSSESTRPSSMLQFFVRGVRTMVMQACPQDTVRSLHERIQTIVGIPVIEQRLIYRGKQLQWEQTLAECSIQNDASLQLVGRMRSTEHPRAWQIINDMVSLIYRLCTGTYNGQDASSVIKGLLNNYLGMAPRTEDNDSAYRYFQSFVSLSAPELLVMLYLSPYRGNKCCADSAIRHFLSACPALSKSLHTQCARVVLEFCTLLRRVGCEDPLYISCRSSLGFLLETADVSSSSENSEGLIVMQDIFPFIGELANCLLRDLDLYIEFSNENVGWPLATDVRDFKAFLLPLKSKIMEQRAFNGLFSSVTDGKRPKNLILGEEIKTLRLMFMELLKKMDQCLQIMEKCLAAKESVEVDLYFGWNHYYSALIEFYHISKLYDGAEEELLSVLRCRRNIFSLLIIRYAKRSDDNQWILGHKSLTDFGSRRHLVLMMFPEIKEDYEELHEMLIDRSQLLAESFEYISRAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDQRRFFPNSASKVHPQHLEYFGFSGRVIALALMHKVQVGIVFDRVFFLQLAGKQITLQDIQDADPFLYSSYKQLLEMDADFIDSDALGLTFVREVEELGYRKVVELCPGGESLAVNSKNREKYVDLLIQDCFVTSISEQVAHFAQGFADILSNSCRKQFFLSLELEDLDWMLHGSQNTISVEDWEAHTEYNGYKETDPQIIWFWEIVSRMSAEERKVLLFFWTSVKYLPVEGFRGLASCLHIYKSSVPIDHLPSSHTCFYQLCLPAYPSRDVMHDCLRIIIQEHIGCSFGCNVIHGSSVKGLYXLNVCQCKAEKQRHHNKKEKKSKLSFIQT 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1417 931 Gene3D Hect, E3 ligase catalytic domain 652 734 - -
Dere10g1417 931 PRINTS Ubiquitin signature 151 172 IPR019956 -
Dere10g1417 931 PRINTS Ubiquitin signature 109 129 IPR019956 -
Dere10g1417 931 PRINTS Ubiquitin signature 130 150 IPR019956 -
Dere10g1417 931 Gene3D Hect, E3 ligase catalytic domain 774 889 - -
Dere10g1417 931 Pfam HECT-domain (ubiquitin-transferase) 581 886 IPR000569 GO:0004842
Dere10g1417 931 SMART ubq_7 101 170 IPR000626 GO:0005515
Dere10g1417 931 MobiDBLite consensus disorder prediction 1 41 - -
Dere10g1417 931 Pfam Ubiquitin family 109 172 IPR000626 GO:0005515
Dere10g1417 931 ProSiteProfiles HECT domain profile. 552 891 IPR000569 GO:0004842
Dere10g1417 931 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 101 889 - -
Dere10g1417 931 SMART hect_3 550 889 IPR000569 GO:0004842
Dere10g1417 931 SUPERFAMILY Ubiquitin-like 107 185 IPR029071 -
Dere10g1417 931 Gene3D Hect, E3 ligase catalytic domains 534 765 - -
Dere10g1417 931 SUPERFAMILY Hect, E3 ligase catalytic domain 528 882 IPR035983 GO:0004842
Dere10g1417 931 MobiDBLite consensus disorder prediction 9 36 - -
Dere10g1417 931 CDD HECTc 531 889 IPR000569 GO:0004842
Dere10g1417 931 ProSiteProfiles Ubiquitin domain profile. 101 174 IPR000626 GO:0005515
Dere10g1417 931 Gene3D - 101 173 - -
Dere10g1417 931 FunFam E3 ubiquitin-protein ligase UPL5 775 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1417 Dere-ChrDere10 26123045 26130796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1417 101 172 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 5.54e-10 56.6