Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1407 ATGGTTTCTCTGCAGGACTCTCACTCCAATTCCAATCGCTTCCCTTTAAGCCGAAACTACTACTCTAGTACCTCTACCGCCAAGAATACTTCCTCCAAAATCCACCGACATACCGGAAGGTCTATGCGAACTATACGCTCTAATTTCTTCCAAGATGATCATAGCTGCTCCTTCACTGCATCGGTCACCGAGAAATCCACTTGCCTATCGGAAAACATGACCGATTCGGTCATCGACCTCAGGCTCGGCGAGCTCGCATCGAAAAACAGCAAATCCGTGAAATCCTCCGCTACGGAGGAGGAGTTGCTTGATCTTTCTCAAGCTTTCAGTGATTTCTCGGCTTGTAGCAGCGATATTTCAGGGGAGCTGCAGAGGCTGGCGAGTTTGCCGTCGCCGGAAAATGTGCAGAAGAGCGATGGTGGTGGTGAGGTGGAGCCGGAGCCGGAGCCAGAGCCGTGCCTGGGGTTTCTGCAGAGAGAGAATTTCTCTACTGAGATCATTGAGAGTATTTCCCCGGAGGATCTTCAGCCGACGGTGAAGATCTGTATCGATGGGCTACAGTCGCCGTCGGTTGCAGTGAAGCGATCGGCTGCGGCTAAACTCAGGCTGTTGGCGAAGAACCGGGCGGATAATCGAGCTCTGATTGGTGAGTCCGGTGCGGTTCCCGCTTTGGTTCCCTTGCTTCGGTGTAGTGATCCGTGGACGCAGGAACACGCCGTCACGGCCTTGCTGAATCTCTCGCTGCACGAAGATAACAAGATGCTGATAACCAATGCAGGAGCTATAAAGTCACTGATTTATGTGCTTAAAACTGGAACGGAGACTTCGAAGCAGAACGCGGCATGTGCGCTTCTGAGCCTTGCGTTGGTAGAAGAAAACAAGAGCTCCATTGGAGCGAGTGGAGCAATACCACCGCTCGTTTCCTTGCTATTGAATGGTTCTAGCAGGGGAAAGAAGGACTCTCTGACGACACTATATAAGCTCTGCTCTATAAAGCCCAACAAGGAGAGGGCGGTGAGCGCCGGAGCGGTGAAACCGCTTGTGGAGATGGTGGCAGAGCAAGGGACGGGTATGGCTGAGAAGGCAATGGTGATACTTAATAGCTTGGCCGGGATTCAGGAAGGGAAGGAAGCAATTGTGGAAGAAGGTGGAATAGCCGCGCTTGTGGAGGCGATTGAAGATGGGTCTGTGAAGGGAAAGGAATTTGCTGTTTTGACACTTCTACAGCTATGTGCTGACAGTGTGAGAAATAGAGGGTTGCTTGTGAGGGAGGGTGGAATACCACCTCTGGTTGCTCTTTCTCAGACTGGAAGTGCTCGAGCTAAGCATAAGGCTGAAACGCTCCTTGGATATTTGAGAGAATCAAGACAAGAAGCATCTACTTCTAGTCCATAG 1395 0.5133 MVSLQDSHSNSNRFPLSRNYYSSTSTAKNTSSKIHRHTGRSMRTIRSNFFQDDHSCSFTASVTEKSTCLSENMTDSVIDLRLGELASKNSKSVKSSATEEELLDLSQAFSDFSACSSDISGELQRLASLPSPENVQKSDGGGEVEPEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSPSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAIKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSSRGKKDSLTTLYKLCSIKPNKERAVSAGAVKPLVEMVAEQGTGMAEKAMVILNSLAGIQEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADSVRNRGLLVREGGIPPLVALSQTGSARAKHKAETLLGYLRESRQEASTSSP 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1407 464 PANTHER U BOX DOMAIN-CONTAINING 142 452 - -
Dere10g1407 464 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 219 261 IPR000225 GO:0005515
Dere10g1407 464 SMART arm_5 290 330 IPR000225 GO:0005515
Dere10g1407 464 SMART arm_5 208 248 IPR000225 GO:0005515
Dere10g1407 464 SMART arm_5 249 289 IPR000225 GO:0005515
Dere10g1407 464 SMART arm_5 372 412 IPR000225 GO:0005515
Dere10g1407 464 SMART arm_5 414 454 IPR000225 GO:0005515
Dere10g1407 464 Pfam Armadillo/beta-catenin-like repeat 210 247 IPR000225 GO:0005515
Dere10g1407 464 Pfam Armadillo/beta-catenin-like repeat 292 330 IPR000225 GO:0005515
Dere10g1407 464 MobiDBLite consensus disorder prediction 1 38 - -
Dere10g1407 464 FunFam U-box domain-containing protein 4 318 459 - -
Dere10g1407 464 SUPERFAMILY ARM repeat 176 453 IPR016024 -
Dere10g1407 464 MobiDBLite consensus disorder prediction 1 32 - -
Dere10g1407 464 FunFam U-box domain-containing protein 4 165 317 - -
Dere10g1407 464 MobiDBLite consensus disorder prediction 128 150 - -
Dere10g1407 464 Gene3D - 163 461 IPR011989 -
Dere10g1407 464 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 342 384 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1407 Dere-ChrDere10 25926284 25928262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1407 156 457 U-box Gene Family AT2G23140 47.419 4.90e-82 264