Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1406 ATGGGAATGGACCCTGGCAAACTTTTCATTGGTGGAATTTCATGGGACACAAATGAAGAACGACTCAGACAGTACTTCCAAAATTTTGGCGATGTGGTGGAGGCAGTAATAATGAAGGATCGGACCACAGGGCGTGCCCGTGGTTTTGGATTCATTGTTTTTTCTGATCCTTCTGTTGCTGAACGGGTTGTTTTAGAAAAGCATGTTATAGATGGTAGAACTGTTGAAGCAAAAAAGGCCATCCCTAGAGATGATCAAAACATTTTGAACAGAAGCAATAGCAGCATTCATGGATCACCTGGTCCTACTCGCACAAAGAAGATATTTGTTGGAGGTTTAGCATCCACAGTTACTGAGAGTGACTTCAAGAAGTACTTTGATCAATTTGGAACAATTACAGATGTCGTTGTGATGTATGACCATAACACTCAAAGGCCAAGGGGTTTTGGATTCATCACCTATGATTCTGAGGAAGCAGTGGATAAAGTTCTGTACAAAACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTTAAGCGGGCTGTTCCAAAGGAATTATCTCCAGGTCCAAGTAGAGGCCAATTAGCTGGATTTAACTATGGTTTAAATAGGTTTAGTGGCTTTTCTAATGGTTTCATTCAGGGATATAATCCGAGCTTGGTTGGAGGGCATGGACTTCGAGCAAATGGCAGATTTAGTCCTGTTACTGTTGGTCGAAATGGATATCCTCCATTAAGTCCTACCTATGGGACAGGATTCAATTTTGAGCCAGCATTTAGTCAAAATGGAAATTCAAACTTAACTTCTACCCTTATTTTAGGACGATCATTGAACCCTTCATATAATGGAAATTCAAGTAGGTACCATAATGCCATGGGCTATACTGGTACAAGTGTAGGCAACAGTTCGAATCAGAATTTGTGGGGGAATGAATATCTTAACTATGCTACTAACCCTACAAATTCTGATGGTTTTCTTGGCTATGGAAGTCAAAATTCAAGCTTGGGTTCTTTTGGTAATATTGGAACACTTTGGAGTTCCTCCCCTAGTGCAGATCAAGCTGGAAATGTTGGCTCTGGCTATGGTAAGGGCAGTCTTAACTACGACTCTGGAGATGTTAATTTTAGGTCAAAAGTAGTAGGATATGGGAAAGCCAGTGAAGGCATTGTTGAATCAGCGTCATCGTATGCTCTATCAAATGGCAATTATGATGGAGCATATAAAGACATCTACGAAGCTGGGTCATTTTTTGGAGACCAAACTTGGAGATCATCACCTTCAGAACTTGAAGATACTGGTTCTCTTGGTTATGACCTTGGAAACTCTGTTTCAGATTTGATGAGCAAAAGCTCTGGGGGCCACATTGGGGCTTATGCTGTTGCCAATAGACAATCAAATAGAGGAATTGCTGCCTAG 1416 0.4089 MGMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFSDPSVAERVVLEKHVIDGRTVEAKKAIPRDDQNILNRSNSSIHGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPGPSRGQLAGFNYGLNRFSGFSNGFIQGYNPSLVGGHGLRANGRFSPVTVGRNGYPPLSPTYGTGFNFEPAFSQNGNSNLTSTLILGRSLNPSYNGNSSRYHNAMGYTGTSVGNSSNQNLWGNEYLNYATNPTNSDGFLGYGSQNSSLGSFGNIGTLWSSSPSADQAGNVGSGYGKGSLNYDSGDVNFRSKVVGYGKASEGIVESASSYALSNGNYDGAYKDIYEAGSFFGDQTWRSSPSELEDTGSLGYDLGNSVSDLMSKSSGGHIGAYAVANRQSNRGIAA 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1406 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Dere10g1406 471 SUPERFAMILY RNA-binding domain, RBD 100 205 IPR035979 GO:0003676
Dere10g1406 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Dere10g1406 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Dere10g1406 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
Dere10g1406 471 SMART rrm1_1 107 179 IPR000504 GO:0003723
Dere10g1406 471 Gene3D - 5 88 IPR012677 -
Dere10g1406 471 SUPERFAMILY RNA-binding domain, RBD 4 100 IPR035979 GO:0003676
Dere10g1406 471 CDD RRM2_Hrp1p 107 184 - -
Dere10g1406 471 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 467 - -
Dere10g1406 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Dere10g1406 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Dere10g1406 471 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Dere10g1406 471 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Dere10g1406 471 Gene3D - 103 189 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1406 Dere-ChrDere10 25917177 25920298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1406 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 31.579 2.83e-15 76.3