Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1395 ATGAGCCCAAAAGAATGTGAAGTTGTGAAGCGATATCAATATCAAGTACTTATTCAAGTCCTCAATGATGTGTTGAACTGCGAGCTTCTACTCTACCAAGAAAATGGGAGCAAGGCAATCGAGAAATGCTTTTTCCTCGTAATCCAGTTCCAGTTCAGCTTTCCGAGAGTCGTTCGTGAATCTGCTCATCGCAAGAAACCAATGGGTCGTTCTCGTGGGAATTTTCACGCTGATGAGGACCCTAATCAACGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGATATTTCAGAATCTGGAGCTGCAGGTCATGGAACAAGTGAAGGAAAAAAGGCTCTTTACCATTGCAATTATTGTAACAAAGATATTACAGGAAAAATCCGAATTAAGTGTGCCATGTGTTCAGATTTTGACCTATGTATAGAGTGCTTCTCTGTTGGAGCTGAGGTGACACCCCATAAAAGCAATCACCCTTACAGGGTTATGGACAATTTATCTTTCCCTCTTATATGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTTGAGGGAATTGAAATGTATGGCTTGGGGAACTGGGCAGATGTTGCTGAGCATGTTGGGACAAAGAATAAAGAAGCATGCATAGAACACTATAGGAATGTTTACTTGAACTCCAAAACTTTTCCTCTTCCGGACATGTCTCATGTTGTTGGAAAAAACAGAAAGGAGCTACTTGCTATGGCTAAAGGACTAGGTGATGACAAGAAAGGGTTTTCTATGGGAGATCTTGCTGTAAAGGAAGAATCTCAATTTTCTCCATCTAGGGTCAAAGTTGAAGATTCTCATAAAGCTGGTACTTCTAGCCGTTTACAGTCCAACTTAAATTCAGAATCAGAATCTGGACCCTCTAGTAGCACACATACTGCAGCAGCTGCTAACCAGAAGGCATCTAATGTGGGTCGGGGCAAAGATGGTCCTGGAGTAATTAAAATGGAAGATCCTCAACTAGAAAGGAATTCTGGAGGAAACAAGCCAAGTTCATCAGGAAATGAAGGTCCTTCTTTAGTAGAGTTGAGTGGTTATAACCCCAAAAGACAGGAATTTGATCCTGAATATGATAATGATGCTGAACAATTACTTGCTGAAATGGAATTTAAGGACAATGACACAGATGACGAACGGGAACTGAAATTACGTGTGTTACGAATATATTCAAAAAGGCTTGATGAAAGAAAGCGTAGAAAGGATTTCATACTTGAAAGAAATTTATTACACCCAAATACTTTCGAGAAGGATTTAACACCTGAAGAGAGGACAATATGCCGGAAATACGATATATTCATGCGCTTTCATACCAAGGAAGAACATGAGGAATTGCTTAGGACAGTTATCTCAGAACACAGAACTCGTAAAAGAATTGAAGAACTTAAGGAGGCCCGGGCTGCCGGTTGTCGCTCATCGGTTGAAGCAGATAGATATCTTGAAAAGAAGAGAAGAAGGGAAGCTGAGGAAAGTGCTCGTAGGTTGAAAGAAAGAGCTCAAGCTGGCCCAAACAATCATGGGGTTCCAAATGCATTTATGTCTCCAGACACTGCTGGCAAGGATTCAAGTGCAAGACCTGCAGGGCCCGCTGGATCAAGCTCTGTCGATGAAATGGATGTGACAGGATACTATGGGGCTGATTTACTTTCTGTACCTGAGAAACGCCTGTGCTGTGAACTAAGGTTGCCTCCAGCCATGTATCTGAAGATGCAAGAGATTCTGTCTCTACAGATACTGAGTGGCAATATCACTGGCAAATCTGATGCCCACCACTTATTCAATATGGATAGCAGCAAGATTGACTGTGTGTACGACATACTCGTGAAAAAGGGGATTGCTCTTCCCTGA 1875 0.4197 MSPKECEVVKRYQYQVLIQVLNDVLNCELLLYQENGSKAIEKCFFLVIQFQFSFPRVVRESAHRKKPMGRSRGNFHADEDPNQRSRRKKNAASGDISESGAAGHGTSEGKKALYHCNYCNKDITGKIRIKCAMCSDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWADVAEHVGTKNKEACIEHYRNVYLNSKTFPLPDMSHVVGKNRKELLAMAKGLGDDKKGFSMGDLAVKEESQFSPSRVKVEDSHKAGTSSRLQSNLNSESESGPSSSTHTAAAANQKASNVGRGKDGPGVIKMEDPQLERNSGGNKPSSSGNEGPSLVELSGYNPKRQEFDPEYDNDAEQLLAEMEFKDNDTDDERELKLRVLRIYSKRLDERKRRKDFILERNLLHPNTFEKDLTPEERTICRKYDIFMRFHTKEEHEELLRTVISEHRTRKRIEELKEARAAGCRSSVEADRYLEKKRRREAEESARRLKERAQAGPNNHGVPNAFMSPDTAGKDSSARPAGPAGSSSVDEMDVTGYYGADLLSVPEKRLCCELRLPPAMYLKMQEILSLQILSGNITGKSDAHHLFNMDSSKIDCVYDILVKKGIALP 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1395 624 SMART sant 170 219 IPR001005 -
Dere10g1395 624 SUPERFAMILY Homeodomain-like 532 621 IPR009057 -
Dere10g1395 624 ProSiteProfiles Zinc finger ZZ-type profile. 111 167 IPR000433 GO:0008270
Dere10g1395 624 MobiDBLite consensus disorder prediction 280 310 - -
Dere10g1395 624 Gene3D - 539 622 IPR036388 -
Dere10g1395 624 MobiDBLite consensus disorder prediction 492 509 - -
Dere10g1395 624 MobiDBLite consensus disorder prediction 71 93 - -
Dere10g1395 624 FunFam Transcriptional adapter 2 539 623 - -
Dere10g1395 624 SMART zz_5 110 155 IPR000433 GO:0008270
Dere10g1395 624 ProSiteProfiles SWIRM domain profile. 538 624 IPR007526 GO:0005515
Dere10g1395 624 MobiDBLite consensus disorder prediction 63 108 - -
Dere10g1395 624 SUPERFAMILY Homeodomain-like 167 220 IPR009057 -
Dere10g1395 624 Gene3D - 105 162 IPR043145 -
Dere10g1395 624 PIRSF Txn_adaptor_ADA2 101 623 IPR016827 GO:0003713|GO:0006357|GO:0035065
Dere10g1395 624 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 114 619 - -
Dere10g1395 624 MobiDBLite consensus disorder prediction 492 545 - -
Dere10g1395 624 Gene3D - 168 219 - -
Dere10g1395 624 FunFam Transcriptional adapter 2 167 219 - -
Dere10g1395 624 ProSitePatterns Zinc finger ZZ-type signature. 116 143 IPR000433 GO:0008270
Dere10g1395 624 ProSiteProfiles SANT domain profile. 169 221 IPR017884 -
Dere10g1395 624 Pfam Zinc finger, ZZ type 112 154 IPR000433 GO:0008270
Dere10g1395 624 FunFam Transcriptional adapter 107 162 - -
Dere10g1395 624 Pfam Myb-like DNA-binding domain 173 216 IPR001005 -
Dere10g1395 624 ProSiteProfiles Myb-like domain profile. 174 217 IPR001005 -
Dere10g1395 624 MobiDBLite consensus disorder prediction 264 364 - -
Dere10g1395 624 CDD SANT 174 216 IPR001005 -
Dere10g1395 624 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 221 IPR017930 -
Dere10g1395 624 SUPERFAMILY RING/U-box 114 176 - -
Dere10g1395 624 CDD ZZ_ADA2 114 162 IPR041983 -
Dere10g1395 624 MobiDBLite consensus disorder prediction 334 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1395 Dere-ChrDere10 25670166 25677308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1395 68 622 EF-hand Containing Proteins AT3G07740 47.692 5.59e-160 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere10g1395 Myb_DNA-binding 4.7e-11 CL0123