Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1390 ATGCATGAAGTTTGCTATATATCATATGAAGTTTTGTCTAGTAAGTTGATGGCTGATGATGAGGCTCAACAGCAACAAAAAGAATCCTTGCTTTCATACTCACGAGACCATTCTAATAATGACCTACAGAGAAGAAGGCGTCCCCGGCGCGGCGGCGCTTCGTCGGAGACCGAGATCAACCAGCAAGAACAAGATCCTAGTCATGAAGCCCCATTGTTACCACACTTAAACTCTGAATTCCAATCCAAGAAAGTAGTTCTATTGCTCCTAGCTGCCTACCTTGGATTAGGCACCCTATCTTTCTTCCTCATAAGGCATCAAATAAAGGGCATAGAGACCAATGGCTTCCTCGATGCCCTTTACTTCTGTGTTGTGACCATGACCACAGTTGGGTATGGAGATCTTGTTCCTGATAGCCCATTGGCCAAACTCCTTGCCTGCATCTACGTCTTCACAGGCATGGCTCTTGGTGGGATAATCATAAGCAAAGCAGTAGATTATTTTCTTGAGAAGCAAGAAATCCTATTGGTTAGAGCCATCCACGTGGGCCAAAAGGTGGGTCCCTCAGAGCTTCTGAAAGAGTTTGAAGCTCACAAAGTGAAGTACAAGTTCTTGCTTGCATCAGCTGCTCTTTTGGTGCTCGTGACTGGAGGAACTGCATTTCTGCATTGGGTCGAGAATCTAGGGTTTGTGGATGCTTTCTACTGTGTTTGTTCTACAGTTACTACATTAGGATATGGAGATAAGAGCTTCTCCACGATTATTGGTCGTGGTTTTGCTGTGTTTTGGATACTGAGTAGCACCGTTTGCATGGCTCAGTTCTTTCTCTATCTTGCTGAACTTTTCACTGAAGGTAGACAAAGATCACTAGTGAGGATGGTTCTTTCAAGAAAATTGTCACTCTCAGATCTTGAGGCTGCAGATCTTGATCATGACAATGCTGTTAGTGCTGCAGAATTTATTTTATACAAGTTGAAGGAAATGGGAAAGATCAGCCAACAAGATATTTCGGTTCTGATGGAAACTTTTAGAAAACTTGACTATGATAAGTCAGGAACTTTGACTCGAGCTGATCTCAAACTCTGGGAATCAACCACCTAA 1101 0.4323 MHEVCYISYEVLSSKLMADDEAQQQQKESLLSYSRDHSNNDLQRRRRPRRGGASSETEINQQEQDPSHEAPLLPHLNSEFQSKKVVLLLLAAYLGLGTLSFFLIRHQIKGIETNGFLDALYFCVVTMTTVGYGDLVPDSPLAKLLACIYVFTGMALGGIIISKAVDYFLEKQEILLVRAIHVGQKVGPSELLKEFEAHKVKYKFLLASAALLVLVTGGTAFLHWVENLGFVDAFYCVCSTVTTLGYGDKSFSTIIGRGFAVFWILSSTVCMAQFFLYLAELFTEGRQRSLVRMVLSRKLSLSDLEAADLDHDNAVSAAEFILYKLKEMGKISQQDISVLMETFRKLDYDKSGTLTRADLKLWESTT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1390 366 ProSiteProfiles EF-hand calcium-binding domain profile. 334 366 IPR002048 GO:0005509
Dere10g1390 366 PRINTS Two pore domain K+ channel signature 242 251 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere10g1390 366 PRINTS Two pore domain K+ channel signature 125 153 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere10g1390 366 SUPERFAMILY EF-hand 304 362 IPR011992 -
Dere10g1390 366 Gene3D - 77 174 - -
Dere10g1390 366 Pfam Ion channel 211 283 IPR013099 -
Dere10g1390 366 Pfam Ion channel 91 168 IPR013099 -
Dere10g1390 366 SUPERFAMILY Voltage-gated potassium channels 199 297 - -
Dere10g1390 366 ProSitePatterns EF-hand calcium-binding domain. 347 359 IPR018247 -
Dere10g1390 366 ProSitePatterns EF-hand calcium-binding domain. 308 320 IPR018247 -
Dere10g1390 366 SUPERFAMILY Voltage-gated potassium channels 84 170 - -
Dere10g1390 366 MobiDBLite consensus disorder prediction 27 73 - -
Dere10g1390 366 Gene3D - 187 287 - -
Dere10g1390 366 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 69 337 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere10g1390 366 MobiDBLite consensus disorder prediction 38 53 - -
Dere10g1390 366 Gene3D - 288 365 - -
Dere10g1390 366 Pfam EF hand 341 360 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1390 Dere-ChrDere10 25643151 25646054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1390 54 366 Ion Channels AT5G55630 55.272 2.95e-123 358