Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1386 ATGTTGAATGTGGATGTGATAGGAAACAAGAAGAGGAAGAGATGTGGGAGGGTTTTCAGATTCAAGAACTTTGGAGAGCCAGGTTATCCAGTGGAGTTTAGAGGGCCATTTCGAGAGAACGTGAACGCACTGCTTGAATTTGCTAATTTGGAGTCTAAATACTTGGCATTGGGAGTGCCTATATGGTCTTTCCAACTTGAGGTTCATCGCCACCCACCTTCTCATATCTTCTTATTTGTGATTGAAGAAGTAGCTGAGGCATCTCTGAATCACCACTGCAAGCATTGTCAATATGTTGGTTGGGGAAACCATTTCATATGCAATAAAAAGTATCATTTTCTTTTGCCATCAAAGGAGACATTGGCAGCAAGTTTGAGCTATGAAGTCCCATGTGAGGCAATTGCTGCTACAAACAACAATAACAATAATGGTAAGTATAAATTAATAGAATTACAAGGCCATATGATGCAAGGAGTTTTTCACTCTAATGGATTCGGGCATTTGCTATGTGTTAATGGGCTCGAAACGGGTTCGGATCTTGCTGGACAACAAATCATGGAGTTTTGGGATCGCTTGTGCACCGGATTGCAAGCAAGGAAAGTGAGTTTGAGTGACATGTCACAGAAAATAGGCATGGAATTGAGACTTATCAATGGAATAGCACATAGTGAACCTTGGTTTGGACGATGGGGCTACAAATTTGGAAGAGGATGCTTTGGTGTGACTCAAGCCACATACCAAAAGGCTATAGAGGCAATAAGAAGCATCCCACTTTACCTTATAATCCACCAAATTGGCAACTCCTACCATGACATCCCAATCATCTTCTCAAGATACCAAACACTCTCAGATCAATCCCTAATCACACTTGGTGAGCTATTTAACTTTATGTCAAAGCTCAAATCTCGCCTTCCTCATCGAGAAAACTTAGTTGATTCGTGTAACACTGGCATTTTGGTTGAAACCAACTGTCGTTGGGCCCCTAAAAGGATTGAAATGGCAACTAAGGTTATTGTTGAGGCCTTGAAAAGAGCCGAGTTCAAGTGGATTTCAAGGCAAGAAGTTAGGGATGCTGCCCGAGCCTACATTGGTGACACTGGATTGCTAGATTTCGTTTTGAAATCACTTGGAAACCACATTGTTGGGAACTACTTGGTTCGCCGAAGCTTGAATCCAGTCACAAAAGTCCTAGAATATTGCTTGGAGGACATTTCCAATGTTTTCCCAAGTCGACATCATCATCAAGAAGGTAATTTGGTCATGAATAATACTAACAAAATTATAAAGGACAGGTATAAGATCACTAGGGCTCAAATCATGAAGGACATGTTTTATGTGTACAAGTACATCCTAAAAGACCCCAAACCAACACAAGGATCAATTTTCTCAGTAATTCTATTAGCAGCCAGAATAATTCTTGACACTAAGTATCTCATCAAAGAGTACTTTGGAGAGCTTCCTTTTCAGGCTAGTCTAGGGTTGGAAGGAAAACTAAGTCTTAATTGTACAATTGTGTTAAGAAATTACAGCAATAATGATCCAAACAAGGCCTCAATAATGCCACCCTATGAGTGTGTTGCATTAAAAAGTAGTGCCACCATTAATGACTTGAAGCTTGAAGTTGAGAGGAATTTCAGAGAGATTTATTGGGCATTAAGGAATTTTTCTGCGAATTCGATTAAAAATTTAGAAAATGCAAATGGGAATGATCTGGTTTTTGGAATGGTTGAAGTGGGTCAAAAGCTAGTGCTTGAAGGGTGGATTATTAATGGGGATCACAACACAGGAATTATGAACATACGTAACTGTGGAGAAATTCGTGAAGGTAATTATGACCTCAATAATAATGGGCCTGTTGTGGATTGCAATTGTGGGACTAAAGAAGATGATGGGGAGAGAATGGTATGTTGTGATATTTGTGAAACTTGGCAGCACACGAGGTGTGTTCGGATTCCGAATGATGAAGAAGTTCCTTCTATATTTCTCTGCAAAAGGTGTGAACAAGAAATTGTTATGTTCCCTTCATTGCCGTAG 2034 0.3992 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVEFRGPFRENVNALLEFANLESKYLALGVPIWSFQLEVHRHPPSHIFLFVIEEVAEASLNHHCKHCQYVGWGNHFICNKKYHFLLPSKETLAASLSYEVPCEAIAATNNNNNNGKYKLIELQGHMMQGVFHSNGFGHLLCVNGLETGSDLAGQQIMEFWDRLCTGLQARKVSLSDMSQKIGMELRLINGIAHSEPWFGRWGYKFGRGCFGVTQATYQKAIEAIRSIPLYLIIHQIGNSYHDIPIIFSRYQTLSDQSLITLGELFNFMSKLKSRLPHRENLVDSCNTGILVETNCRWAPKRIEMATKVIVEALKRAEFKWISRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVFPSRHHHQEGNLVMNNTNKIIKDRYKITRAQIMKDMFYVYKYILKDPKPTQGSIFSVILLAARIILDTKYLIKEYFGELPFQASLGLEGKLSLNCTIVLRNYSNNDPNKASIMPPYECVALKSSATINDLKLEVERNFREIYWALRNFSANSIKNLENANGNDLVFGMVEVGQKLVLEGWIINGDHNTGIMNIRNCGEIREGNYDLNNNGPVVDCNCGTKEDDGERMVCCDICETWQHTRCVRIPNDEEVPSIFLCKRCEQEIVMFPSLP 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1386 677 SUPERFAMILY FYVE/PHD zinc finger 611 669 IPR011011 -
Dere10g1386 677 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 671 - -
Dere10g1386 677 ProSitePatterns Zinc finger PHD-type signature. 622 666 IPR019786 -
Dere10g1386 677 SMART PHD_3 621 667 IPR001965 -
Dere10g1386 677 ProSiteProfiles Zinc finger PHD-type profile. 619 669 IPR019787 -
Dere10g1386 677 CDD PHD_MMD1_like 621 666 - -
Dere10g1386 677 Pfam PHD-finger 622 668 IPR019787 -
Dere10g1386 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 671 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1386 Dere-ChrDere10 25612032 25616611 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1386 10 677 PHD Transcription Factor Family AT5G22260 51.533 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere10g1386 PHD 1.2e-08 CL0390