Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1384 ATGAGTCGCAAGACTCGATTCTTGAGGCAAGAGACGAAGTCCTTGGTACATGGGTCGGTGCTGAAGTTCCAGGATGAGAGCCTGTTAGACAAGGTGCAAGGAAGAATGTGCGAGTACCGATCCGCAGGTGAAGCTAAACTTGGGGTGGCTGGCCATCGTGCAACTCGTCGCCATGTCTCTTGTCTTATTGAAATGGTAACTAAGGTTATTGTTGAGGCCTTGAAAAAAGCTAAGTTTAGGTGGATTTCAAGGCAAGAAGTTCGGGATGCTGCTCGAGCCTACATTGGTGACACTGGATTGCTAGATTTCATGTTGAAATCACTTGGAAGCCACATTGTTGGGAACTATTTTGGTTCGTCGAAGCTTGAATCCAGTCACAAAAGTCCTAGAATATTGTTTGGAGGACATTTCCAATGTTTTCCCAAGTCGACATCATCATCAAGAAGTTGTGGGACTAAAGAAGATGATGGGGAGAGAATGGTATGTTGTGATATTTGCAAAACTTGGAAGCACACGAGGTGTGTTCAGATTCTAAATGATGAAGAAGTTCCTTCTATATTTCTCTACAAAAGGTGTGAACAAGAAATTGTTATGTTCCCTTCATTGCCGTAG 612 0.4346 MSRKTRFLRQETKSLVHGSVLKFQDESLLDKVQGRMCEYRSAGEAKLGVAGHRATRRHVSCLIEMVTKVIVEALKKAKFRWISRQEVRDAARAYIGDTGLLDFMLKSLGSHIVGNYFGSSKLESSHKSPRILFGGHFQCFPKSTSSSRSCGTKEDDGERMVCCDICKTWKHTRCVQILNDEEVPSIFLYKRCEQEIVMFPSLP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1384 203 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 149 197 - -
Dere10g1384 203 Pfam PHD-finger 150 193 IPR019787 -
Dere10g1384 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 198 IPR013083 -
Dere10g1384 203 SUPERFAMILY FYVE/PHD zinc finger 149 186 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1384 Dere-ChrDere10 25587799 25591123 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1384 150 203 PHD Transcription Factor Family AT5G22260 57.407 6.03e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere10g1384 PHD 6.1e-07 CL0390