Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1352 ATGAAACGTCCAATCGATGACATCGTTGTGCCCTTGGCTTCTTCGACTTCGTCTTCCTCCCCTGCCACCGCTGCCGCTGCCGCTGCCGGAGCTTCTAAACCATTGTTCTTAACGAAAGCTCAACGCGAACAATTGGCCCTTAAGCGCCGCCAAGAAGAAATCGCCGAACAAAGACGCCGCCAGGAGCAGCTGCTTTCTCGCAACCGCCCCTCCGATCCGACAACTGATTCTAAACCCTCCGATTCCGACCGCCGAGACCGCGACCGCGACCGCGATCGGGACCGGGATAGAGACCGCGATAGGGATAGGGATAGAGACCGGGAACGAGAGCGAGACCGTGAACGTGAGCGCGATAGGGCTCGCGATCGGGACCGCGAAGCGGAGCGGCGGAATCGCGAGAGGGAGCGTGAAGAGGAGGCTAGGGCACGCGAGCGTGCTCGGTTGGGGAAATTGGCGGAGCGGGAGCGTGAGAAAGAGCTTGATGCGATCAAGGAGCAGTATCTCGGTTCCAAGAAGCCTAAGAAGCGGGTTATTAAACCGAGTGAGAAGTTCCGGTTTTCCTTCGACTGGGAGAACACGGAGGATACTTCTCGCGATATGAACGCGCTCTACCAGAACCCTCACGAGGCGCAGCTGCTCTTTGGGCGTGGCTTTCGTGCTGGCATGGACCGTCGTGAGCAGAAGAAACTTGCTGCTAAGAATGAGAAGGAGATGCGTGAACAGATCCGGAAGAAGGAGGGCGTGGAGGAGAAACCCGAGGAGGCTGATGCACTACGGCGAAAGGAGGCTGCTGCTGACCTCTATGACACCTTCGACATGAGAGTGGACCGCCATTGGAGCGAGAAGAAGCTTGAGGAGATGACTGAAAGGGATTGGCGTATATTTAGGGAGGATTTTAACATTTCTTACAAGGGTTCTAAAATTCCTCGTCCAATGCGTAGCTGGGTTGAGAGTAAGTTGAGTCCTGAGCTATTGAAGGCTGTTGAGAAGGCCGGGTACAAGACCCCTTCTCCCATTCAGATGGCTGCCATTCCGCTTGGCCTTCAGCAGCGTGATGTCATTGGTATTGCAGAGACAGGTTCAGGGAAGACTGCTGCTTTTGTTCTTCCTATGTTGAGTTATATCACAAGGCTTCCTCCTATGAGTGAAGAGAATGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCACCTACCCGTGAGCTTGCCCAGCAGATTGAGGATGAGACCGTGAAGTTTGCCCAGTATCTGGGAATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAGGAGCAAGGGTTTAAGATAAGGCAAGGCTGTGAAATTGTAATTGCGACTCCCGGTCGATTAATTGACTGCCTGGAGCGACGATATGCTGTCCTAAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTAATGGGTGTCTTGGATGCGATGCCTTCCAGCAATCTGAAACCTGAAAATGAGGATGAGGAGCTTGACGAGAAGAGGATTTACAGAACCACTTATATGTTCAGTGCCACCATGCCACCCGCTGTTGAGCGGCTTGCTAGGAAATACCTAAGGAATCCTGTTGTGGTAACCATCGGCACTGCAGGAAAGGCCACTGACTTGATCAGCCAGCATGTGATTATGATGAAGGAATCGGAGAAATTTTTCAAACTTCAGAGGTTGCTTGATGAACTTAATGACAAGACAGCAATTGTATTCGTTAACACTAAGAAAAATGCTGATATGGTTGCAAAGAATTTAGATAAGGACGGATACCGTGTGACAACTTTGCATGGTGGGAAGTCGCAGGAGCAGAGGGAGATTAGTCTGGAAGGATTTAGGACCAAGAGATATAATGTCCTGGTTGCGACTGATGTTGCAGGACGTGGAATTGACATACCTGATGTGGCTCATGTCATAAACTATGATATGCCTGGGAATATTGAAATGTATACACATCGTATCGGCCGTACTGGTCGTGCTGGAAAGACAGGTGTGGCTACAACATTCCTGACTCTTCAGGACACTGATGTCTTTTATGACCTCAAACAGATGCTTATACAGAGTAATAGTCCTGTTCCCCCTGAATTGGCAAGACATGAGGCTTCAAAATTCAAGCCAGGAACAATTCCTGATAGACCACCTAGACGTAATGACACTGTGTTTGCACACTGA 2202 0.5032 MKRPIDDIVVPLASSTSSSSPATAAAAAAGASKPLFLTKAQREQLALKRRQEEIAEQRRRQEQLLSRNRPSDPTTDSKPSDSDRRDRDRDRDRDRDRDRDRDRDRDRERERDRERERDRARDRDREAERRNREREREEEARARERARLGKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEADALRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWVESKLSPELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFFKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1352 733 Coils Coil 37 67 - -
Dere10g1352 733 MobiDBLite consensus disorder prediction 227 256 - -
Dere10g1352 733 FunFam probable ATP-dependent RNA helicase DDX23 274 543 - -
Dere10g1352 733 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 245 710 - -
Dere10g1352 733 MobiDBLite consensus disorder prediction 708 733 - -
Dere10g1352 733 Coils Coil 225 251 - -
Dere10g1352 733 Pfam DEAD/DEAH box helicase 338 528 IPR011545 GO:0003676|GO:0005524
Dere10g1352 733 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 344 539 IPR014001 -
Dere10g1352 733 SMART ultradead3 332 554 IPR014001 -
Dere10g1352 733 MobiDBLite consensus disorder prediction 11 25 - -
Dere10g1352 733 Pfam Helicase conserved C-terminal domain 566 671 IPR001650 -
Dere10g1352 733 MobiDBLite consensus disorder prediction 74 149 - -
Dere10g1352 733 MobiDBLite consensus disorder prediction 701 733 - -
Dere10g1352 733 Gene3D - 274 543 IPR027417 -
Dere10g1352 733 FunFam probable ATP-dependent RNA helicase DDX23 544 732 - -
Dere10g1352 733 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 468 476 IPR000629 -
Dere10g1352 733 SMART helicmild6 590 671 IPR001650 -
Dere10g1352 733 MobiDBLite consensus disorder prediction 48 66 - -
Dere10g1352 733 Coils Coil 117 154 - -
Dere10g1352 733 CDD DEADc_DDX23 324 540 - -
Dere10g1352 733 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 566 710 IPR001650 -
Dere10g1352 733 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 313 341 IPR014014 GO:0003724
Dere10g1352 733 MobiDBLite consensus disorder prediction 48 149 - -
Dere10g1352 733 Gene3D - 544 731 IPR027417 -
Dere10g1352 733 CDD SF2_C_DEAD 551 680 - -
Dere10g1352 733 MobiDBLite consensus disorder prediction 1 35 - -
Dere10g1352 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 692 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1352 Dere-ChrDere10 25004242 25006443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1352 319 707 Eukaryotic Initiation Factors Gene Family AT1G72730 33.077 5.04e-61 209