Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1316 ATGCCCAGTTTTGCAACTTCTTGGGGTACACTTCGTAGTTTTGCCAATGCAAGTTGGCTAAGCTCTGACCTACCATCAGCTATTGGGAAAGATTCTGGTACAAATTCTCTAATGGAATGCGAGCAGTCTCTATGTATGACAGTCTTTTACATCAAAGTAAATGAGAGCTTTTCTGGGAGTTCTTTGTATTCTATATCGACGTTTTTCTTAGAATTTTTCTCCTTTCTTTCAGAAGTAAGAAACCTTTTCTGCTACAAGGCAGACTTCTTACCAGGGATACAAACTCCGAATATGCCGTTTTCCTGTGCAAAAAACTTCTTCCAGAGGTTCTGGTTAGATGAATTCCACATGGGAAGTTTTGCCCATAGCAGCTTTTTGTCTAATGATCTCCTGCCATCTCTAGGAGCCCAAATTGTCCAAGAAGCCAGACTCCGAAGATACATAATCTCCCCCTTTGATCCTCGATATAGGGCGTGGGAGATGCTACTGGTAGTTCTAGTCATTTACTCAGCCTGGATATGCCCGTTTCAGTTTGCCTTTCTGCCTTCCAAGCAAGATGCATTACTGATCATCGACAACATTGTTGATGGCTTCTTTGCCATTGACATCATGCTGACATTCTTTGTTGCATATCTAGATAGCCAGTCTTACCTCCTTGTTGATGATCACAAGAGAATTGCGATAAGGTATCTCTCTACCTGGTTTATATTTGACGTCTGCTCAACGGCACCATTTCAGTCCATCAGCCTCCTCTTCACTAATCATAGCAGTGAGCTTGGCTTTGAACTTCTTAACATGCTTCGACTATGGCGTCTGAGACGAGTCAGCTCTCTGTTTGCAAGCCTTGAGAAAGACATCCGCTTCAATTATTTCTGGATTAGGTGCACAAAACTCATTCTTGTAACTTTGTTTGCAGTACACTGTGCCGGATGCTCTTACTATCTAATTGCAGATAAGTACCCTGATTCCAAAAGGACCTGGATTGCTGCAATGTACCCAAATTTCAAAGAAGAAAGTCTTTGGGACAGATATGTAACTGCAGTATACTGGTCCATAGTCACACTTACCACTACTGGCTATGGGGATCTACATGCTCAAAACCCAAGAGAGATGCTGTTTGATACCTTGTACATGCTGTTCAATTTGGGATTAACATCATACATTATTGGAAACATGACAAACCTTGTGGTTCACTGGACCAGCCGCACCAGAAATTTTAGAGATACAGTCAGAGCAGCATCAGAATTTGCATCAATGAATCACTTGCCCCATCACATACAAGGTCAAATGTTGTCACACTTGTGTCTGAGGTTTAAAACGGAAGGATTGAAGCAGCAAGAAACATTAAATGGTCTGCCTAAGGCAATTCGTTCAAGCATTGCGAATCATCTCTTCTTTCCTGTTGTGAAGGAGGTCTACCTCTTCCATGGAGTTTCCCATGACTTCCTATTCCAACTGGTCTCAGAAATGGAAGCTGAGTATTTTCCACCCAAGGAAGATGTGATACTGCAAAATGAGGCTCCTACTGACCTTTACGTGCTTGTTTCAGGGGCAGTGGATCTTATTCGCCACATAGATGGGCATGATCAAGTTCTCGGGAAGGCAATTTCAGGAGAAGTATTTGGGGAGATTGGTATATTACAATACGGACCACAGCCGTTCACAGTTCGGACGACGGAGCTTTCTCAAATTTTACGACTTAACAGAACTTCATTGATGAATGCTGTACAAGCATATCCAGAAGACTCAAAAATTATAACGGATAACCTTTTCATGAGATTAAAGAGACAAGAAGGATTGGGCTTTGAATATCCACTTGCAGATCCTGGATTGGTTCTTCATGAAAAGCAAGATGGAGAAAAAACAAGAGAAAGCTTTTCTCGTGCATGTACAATCAAGTCACACGAGGATTCATCAAACCCGGAAAGAAGGCATAGAGACTTCACAGACTCAGAGATCAGATTGCATAAGGTAGCATGCGAGGATGGTGAAAGAGATAATCATGCTGCTGCACTCAAAAGGCATCCAGAGATGGTTGATATACTGATCGAAAGGGATGCAAAAGCAAAGAATCTGAATTCCATAGGATGGACACCAAAAAATCTGGTAGCGCAGCAAGAGAACAAGAGCACTTCAAACTTAATGAATTGTGAAAATAGGGAGAAATCAGACGAATATAGAATAGAATTTGTGGTGCCAGAAATTTTTAACCACACTAGGAATGACACAACCAGGGACAGAAAACACGTTGAGAATGTATACAAAAACTCCTATTCAGGTAATCCTAACTGTCCAAGTAATAGAGAAGTGGCCAGATTCATCAAGAAGAGAGTCACGATTCACTTGCTAGGCCAACGCAGGAGTACCTCACAGGGACAGAGCGGGAAGTTGATTATTCTACCTGGTTCAATAGAAGAGCTGCTCAAGATTGCCGATGACAAGTTTGGAGGATCAAAACCTACAAAAATTGTTAATACAGAGAATGCAGAGATAGATGACATAAGTGTCATTCGAGATGGCGATCACCTCTTTTTCCATAGCAGCAATAATGAAAATTTGCGGTCATGA 2568 0.4171 MPSFATSWGTLRSFANASWLSSDLPSAIGKDSGTNSLMECEQSLCMTVFYIKVNESFSGSSLYSISTFFLEFFSFLSEVRNLFCYKADFLPGIQTPNMPFSCAKNFFQRFWLDEFHMGSFAHSSFLSNDLLPSLGAQIVQEARLRRYIISPFDPRYRAWEMLLVVLVIYSAWICPFQFAFLPSKQDALLIIDNIVDGFFAIDIMLTFFVAYLDSQSYLLVDDHKRIAIRYLSTWFIFDVCSTAPFQSISLLFTNHSSELGFELLNMLRLWRLRRVSSLFASLEKDIRFNYFWIRCTKLILVTLFAVHCAGCSYYLIADKYPDSKRTWIAAMYPNFKEESLWDRYVTAVYWSIVTLTTTGYGDLHAQNPREMLFDTLYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAASEFASMNHLPHHIQGQMLSHLCLRFKTEGLKQQETLNGLPKAIRSSIANHLFFPVVKEVYLFHGVSHDFLFQLVSEMEAEYFPPKEDVILQNEAPTDLYVLVSGAVDLIRHIDGHDQVLGKAISGEVFGEIGILQYGPQPFTVRTTELSQILRLNRTSLMNAVQAYPEDSKIITDNLFMRLKRQEGLGFEYPLADPGLVLHEKQDGEKTRESFSRACTIKSHEDSSNPERRHRDFTDSEIRLHKVACEDGERDNHAAALKRHPEMVDILIERDAKAKNLNSIGWTPKNLVAQQENKSTSNLMNCENREKSDEYRIEFVVPEIFNHTRNDTTRDRKHVENVYKNSYSGNPNCPSNREVARFIKKRVTIHLLGQRRSTSQGQSGKLIILPGSIEELLKIADDKFGGSKPTKIVNTENAEIDDISVIRDGDHLFFHSSNNENLRS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1316 855 ProSiteProfiles cAMP/cGMP binding motif profile. 474 593 IPR000595 -
Dere10g1316 855 Gene3D Jelly Rolls 467 599 IPR014710 -
Dere10g1316 855 PRINTS EAG/ELK/ERG potassium channel family signature 388 397 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere10g1316 855 PRINTS EAG/ELK/ERG potassium channel family signature 192 202 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere10g1316 855 PRINTS EAG/ELK/ERG potassium channel family signature 203 212 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere10g1316 855 PRINTS EAG/ELK/ERG potassium channel family signature 344 361 IPR003938 GO:0005249|GO:0006813|GO:0016020
Dere10g1316 855 FunFam Potassium channel KAT2 462 598 - -
Dere10g1316 855 SUPERFAMILY Voltage-gated potassium channels 151 396 - -
Dere10g1316 855 PANTHER POTASSIUM CHANNEL AKT1 122 597 IPR045319 GO:0005249|GO:0006813
Dere10g1316 855 Pfam Cyclic nucleotide-binding domain 494 578 IPR000595 -
Dere10g1316 855 Pfam KHA, dimerisation domain of potassium ion channel 776 845 IPR021789 -
Dere10g1316 855 SUPERFAMILY cAMP-binding domain-like 401 594 IPR018490 -
Dere10g1316 855 FunFam Potassium channel KAT3 158 398 - -
Dere10g1316 855 Gene3D Helix hairpin bin 398 464 - -
Dere10g1316 855 SMART cnmp_10 474 591 IPR000595 -
Dere10g1316 855 Gene3D - 157 397 - -
Dere10g1316 855 CDD CAP_ED 474 586 IPR000595 -
Dere10g1316 855 ProSiteProfiles KHA domain profile. 777 855 IPR021789 -
Dere10g1316 855 Pfam Ion transport protein 157 403 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1316 Dere-ChrDere10 24408273 24418402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1316 93 850 Ion Channels AT4G18290 59.061 0.0 854