Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1308 ATGGATTGCTACGTCTTCTGTGATTCTATGATTATGTTGTTTTATGTTCGGGCCGGTGATGTCCGGTGGCGAGAGACGCGATCTGCCTTTCCGGTAAGGGTTTTCACATCGCCGAAGCAGAAGCGCAGAAGCTCCAACCAAGACCTTAGAGTTCGTCCTCGTCGCCTTGCAATCATGTCAAGGAGAAAGGTTAGGGAGCCAAAGGAAGAAAATGTGACACTTGGTCCCGCCGTCAGAGATGGTGAACATGTTTTTGGCGTAGCCCATATCTATGCGTCATTTAATGACACTTTCATTCACGTGACTGATTTGTCTGGGAGGGAAACCCTTGTTCGCATCACTGGTGGAATGAAGGTTAAAGCTGACAGAGACGAATCTTCCCCTTATGCTGCTATGCTTGCAGCACAGGATGTATCTACTAGATGCAAGGAGCTGGGCATAACTGCTCTTCATATCAAGCTCCGTGCAACTGGTGGAAACAAGACGAAAACACCAGGTCCTGGTGCTCAGTCTGCTCTCCGTGCCCTTGCACGTTCAGGAATGAAAATTGGTCGGATAGAGGATGTGACGCCAATTCCATCTGACAGCACTCGTAGAAAGGGTGGTAGAAGAGGTAGAAGGCTTTAA 627 0.4864 MDCYVFCDSMIMLFYVRAGDVRWRETRSAFPVRVFTSPKQKRRSSNQDLRVRPRRLAIMSRRKVREPKEENVTLGPAVRDGEHVFGVAHIYASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1308 208 Gene3D Ribosomal protein S11 59 208 IPR036967 GO:0003735|GO:0005840|GO:0006412
Dere10g1308 208 MobiDBLite consensus disorder prediction 188 208 - -
Dere10g1308 208 Hamap 30S ribosomal protein S11 [rpsK]. 39 205 IPR001971 GO:0003735|GO:0005840|GO:0006412
Dere10g1308 208 FunFam 40S ribosomal protein S14 59 208 - -
Dere10g1308 208 SUPERFAMILY Translational machinery components 82 204 - -
Dere10g1308 208 ProSitePatterns Ribosomal protein S11 signature. 173 195 IPR018102 -
Dere10g1308 208 Pfam Ribosomal protein S11 86 204 IPR001971 GO:0003735|GO:0005840|GO:0006412
Dere10g1308 208 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 61 203 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1308 Dere-ChrDere10 24282191 24285659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1308 59 197 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 89.928 6.80e-92 264