Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1300 ATGGCGAAGGAAGCTACGAGGTCACGGAAGAGGTCTCTCTCATCACCCTCGGCTTCTTCTGCTTCTGATGAACGCTCCACCAGACCTTCTTCTAACGGCAGAATAGAGTTGAGGGTAAAATTCAACGAGGGTATGAGGAAATCTGCCCAGCAGACTAATTCAGGAAAGAAACCCAAAGCAAAGCAAAAGAAGAATAACAAAAAACTTGATGCTAAGAAGCCAAAGAAACCGCCAACTGCTTTCTTCTTTTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGGTGTCAAGTCAATGCGTGATATTGGCAAGGCTTGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCCACTGAAAAGCGAGCAGAATTTGATAGAGCAATGATTGAATATAACAAGAAAATGGAAAGTGGAGAGTACGAACAAAATGATGAAGAATCAGAGTTTGATGAGTAG 489 0.4131 MAKEATRSRKRSLSSPSASSASDERSTRPSSNGRIELRVKFNEGMRKSAQQTNSGKKPKAKQKKNNKKLDAKKPKKPPTAFFFFLEDFRKEFQEQNPGVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMIEYNKKMESGEYEQNDEESEFDE 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1300 162 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 74 143 IPR009071 -
Dere10g1300 162 Gene3D High mobility group box domain 56 159 IPR036910 -
Dere10g1300 162 MobiDBLite consensus disorder prediction 57 71 - -
Dere10g1300 162 Pfam HMG (high mobility group) box 74 143 IPR009071 -
Dere10g1300 162 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 47 159 IPR031061 -
Dere10g1300 162 SMART hmgende2 73 144 IPR009071 -
Dere10g1300 162 MobiDBLite consensus disorder prediction 11 28 - -
Dere10g1300 162 CDD HMG-box_AtHMGB1-like 79 135 - -
Dere10g1300 162 MobiDBLite consensus disorder prediction 1 76 - -
Dere10g1300 162 SUPERFAMILY HMG-box 67 148 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1300 Dere-ChrDere10 24193198 24204343 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere10g1300 HMG_box 1.1e-18 CL0114