Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1271 ATGGAGACGGAGCCTCTGCTCACATATATGAGTCCCAGAAAGAGGCCTCCACCGCCGCATCTCACGTCACTGCCGGAGAATGACGAGATTTTTCTTCATCTGAATCCGTCGGAGATCAAGGACCGCCTTATCTTCGGCCCCGCGTCTTCTCCTAGAGATTCTGCACCCCTAGTTGAAGCATTAACGCTTTCTCTTAATTCCCCAACTTCTTCTACACATGAGCAGCTGTCTGCTCTCGTCGATTCTCAATCCCAACAACCCCCTCAATCTTTGGCTGTTGATCCCAATTACACATGGCGGAGAACTAATTTTCATCGCAGTAAAACGGCGCCGGCTATGGTTGTGATCGGCGATTTCAACCACATTCCCTCTGTGCCTAAACCCCAATTTGGTTCACATTCAATTGTTCGACAAGCGGTTATTCTTGTGGTTGTTTATTTGTCGTTGGGGGTGGCTATTTATTGGTTCAATCGTCATAACTTTGCTGCAGTTGAGACTAATCCTGTGGTGGATGGATTGTATTATTGTGTAGTGACAATGTGTACAATAGGGTACGGCGATATCACTCCCAATAGTACAGCAACAAAGCTTTTCTCTGTTCTGTTTGTGTTGGTGGGTTTTGGGTTTGTTGACATATTACTCAGTGGGATGGTGAGTTATGTTCTTGATTTGCAGGAGAGTCACCTGCTTAGGACGGTGAAGGGTAGGGGTGAGAATGACAAGAGATCATACATAATTGATGTGAAGAAAGGGAGGATGAGGATTAGGATGAAGGTGGCCTTGGCATTGGGGGTTGTGGTGCTTTGTATTGGAGTTGGTGTATGTGTTATGCATTATGTGGAGATGCTTGGTTGGATGGATTCTTTGTATGTTTCTGTTATGTCGGTCACAACTGTTGGCTATGGTGATCAGGCATTCAAGTCATTGTCTGGTCGAATCTTTGCTGTAATTTGGCTGCTAGTATCGACCCTTGCAGTGGCCCGGGCTTTCCTTTATTTAGCTGAGGCAAGAGTGGATAAGCGGAATAGAATGATGGCAAAGTGGATTCTCGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCTGACTTAGACAATAACGGCTTTGTGAGTAAATCAGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTGTCAGAGAAAGACATCATGCAGGTTTGTGAGAAGTTTGATAGGCTAGATACTGGCAACTGTGGAAAAATAACACTTGCTGATCTTCTGGAGGGTCATCATTGA 1260 0.4492 METEPLLTYMSPRKRPPPPHLTSLPENDEIFLHLNPSEIKDRLIFGPASSPRDSAPLVEALTLSLNSPTSSTHEQLSALVDSQSQQPPQSLAVDPNYTWRRTNFHRSKTAPAMVVIGDFNHIPSVPKPQFGSHSIVRQAVILVVVYLSLGVAIYWFNRHNFAAVETNPVVDGLYYCVVTMCTIGYGDITPNSTATKLFSVLFVLVGFGFVDILLSGMVSYVLDLQESHLLRTVKGRGENDKRSYIIDVKKGRMRIRMKVALALGVVVLCIGVGVCVMHYVEMLGWMDSLYVSVMSVTTVGYGDQAFKSLSGRIFAVIWLLVSTLAVARAFLYLAEARVDKRNRMMAKWILGQDMTVSEFLAADLDNNGFVSKSEYVIYKLKEMGKVSEKDIMQVCEKFDRLDTGNCGKITLADLLEGHH 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1271 419 SUPERFAMILY Voltage-gated potassium channels 137 233 - -
Dere10g1271 419 FunFam Two-pore potassium channel 3 242 356 - -
Dere10g1271 419 Pfam Ion channel 141 221 IPR013099 -
Dere10g1271 419 Pfam Ion channel 266 334 IPR013099 -
Dere10g1271 419 Gene3D - 333 419 - -
Dere10g1271 419 SUPERFAMILY Voltage-gated potassium channels 249 355 - -
Dere10g1271 419 Gene3D - 231 332 - -
Dere10g1271 419 SUPERFAMILY EF-hand 357 415 IPR011992 -
Dere10g1271 419 PRINTS Two pore domain K+ channel signature 178 206 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere10g1271 419 PRINTS Two pore domain K+ channel signature 297 306 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere10g1271 419 Gene3D - 133 230 - -
Dere10g1271 419 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 140 393 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere10g1271 419 MobiDBLite consensus disorder prediction 1 25 - -
Dere10g1271 419 ProSitePatterns EF-hand calcium-binding domain. 363 375 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1271 Dere-ChrDere10 23683502 23688380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1271 3 417 Ion Channels AT4G18160 61.305 9.26e-178 501