Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1263 ATGGGTCGAGCAAAATTGACAATGAAGCTGATAGAAAAGGAGAAATCAAGAAAGGCAACGTTTTACAAGAGAAAGAATGGAATAATTAAAAAAGCTCACGAGCTCTCCACTTTGTGTGGAGTTGATTCTTGCTTCATTGTCTTCAACCCTAACTCTGACGACCACTGTCCAGAAACTTGGCCTAGAGATTCCAAAGAGGTACACCGAATCATTAAGAAGTATGAGATCAAGAGCATAGAGAAAAGACCAAAGAAGTATGACGTGGTGGAGTTCTTCAAGGACAGAAAGAACAAGGTGGAAGCCGAAGCTTTCAAGCGTCAGAAAGAGAGGTTGAAAATCCTATATCCGACATGGGACATCAGTTTCGACATACTGAGGGAGGATCAACTAAGGATGTTTCTCACTTTTTTGGATGTTAAGATTGAAGATTGCATGCAGAGGATTAACGTGTTGAAGACGAAGCATCACCTTAAGGAAAAAGGAGCAGAATCATCAGACATCGCTTCAAGCAGTAGCCAGGTCATCAGTTTCATGCAAAAGAGCACTTCTCAGCCCCAAGATTTTTCAATGCCTTATCAGATGATGCTTCCCTTGGATCCAAATCTGATGCATTTGATGGTGACACAGAATGCTACCCCTGGAAGCAATAGTGCTCTTGGTTTTTATGATCCCATGGATCATGGAGGAGGAGCTAGTAATTACGCTGATCCTTCTGCTTCTTCTCCATGCTACTACAATTGTAATTACTATCCTTCTCTACAGAAACTTCCTGCACAGGTTAATGTTATGCAACATCATCATGAAGTAAATTTGCAAGCCCCCCACCTCAGATGA 834 0.4173 MGRAKLTMKLIEKEKSRKATFYKRKNGIIKKAHELSTLCGVDSCFIVFNPNSDDHCPETWPRDSKEVHRIIKKYEIKSIEKRPKKYDVVEFFKDRKNKVEAEAFKRQKERLKILYPTWDISFDILREDQLRMFLTFLDVKIEDCMQRINVLKTKHHLKEKGAESSDIASSSSQVISFMQKSTSQPQDFSMPYQMMLPLDPNLMHLMVTQNATPGSNSALGFYDPMDHGGGASNYADPSASSPCYYNCNYYPSLQKLPAQVNVMQHHHEVNLQAPHLR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1263 277 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Dere10g1263 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Dere10g1263 277 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Dere10g1263 277 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Dere10g1263 277 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere10g1263 277 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere10g1263 277 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere10g1263 277 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Dere10g1263 277 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dere10g1263 277 PANTHER MADS BOX PROTEIN 3 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1263 Dere-ChrDere10 23646036 23646957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1263 1 147 Type I MADS-box Gene Family AT5G55690 36.424 2.67e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere10g1263 SRF-TF 3.3e-19 No_clan