Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1249 ATGAGCACAGGAAGCAGAGAGATAGTGAAAGACGCATCTTCGTCTTCCTTCTCCTCCTCCTCAACGTCACTTGCAAGCAACATGAAGAACAACGCTAGAATTGCTGAAAGAGACAAAGCGATTGCTCAGTACAGTGCTGACGCTAGGATTTTGGCCGAGTATGAGCAATCTGGTGCGTCTGGCAAATCGTTCGATTACTCAAGGTCGGTTCTTGATCCTCCGAAATCCGTGCCCGATGAGAAAATGACGGCTTACTTGTCCAAAATCCAAAGAGGCGGTCTCGTTCAGCCATTTGGTTGTATGCTTGTGATTGATGAACCCACTTATCGAATCATAGGGTACAGTGAGAATTGCTATGAAATGTTGGGATTGCATGGAAAATCTGATTCGAAACGGTTTGTGAATCTAATTGGAGTTGATGCTACAACCCTCTTCACGCCTTCTTCTGGGACTTCCCTAGCAAAAGCTGCGGCATCAAGGGAAATTTCGCTTCTGAACCCGATTTGGGTCTATTCTAGAACAACCCAGAAGTCATTTTATGCTATACTGCATAGGATTGACGTGGGGATTGTAATTGATTTGGAGCCTGCAAGGTCTAGTGATCATGCATTGTCACTTGCTGGCGCAGTACAGTCTCAGAAGTTAGCTGTACGGGCAATTTCAAGGCTGCAATCTCTTCCCGGGGGAGATATTGGAGTTTTGTGTGATACTGTTGTTGAAGAAGTTCAAAAGCTTACTGGATATGACAGGGTTATGGTATATAAGTTCCATAACGATGATCATGGTGAGGTTGTGTCTGAAATCAGAAGGTCAGATTTGGAGCCCTACTTGGGTTTACATTACCCTGCCACAGATATCCCTCAAGCTGCTCGCTTCCTATTCAAGCAGAACCGTGTCAGGATGATTTGTGATTGCCATGCAAAACCAGTTAAGGTGATTCAAAGTCAAGAGTTAAAGCAGCCTCTCTGCTTGGTGAATTCAACCCTTAGATCCCCACATGGATGTCACACACAGTACATGGCTAACATGGGCTCAATTGCCTCTCTGGTGTTGGCAATTATTGTCAATGGAAAAGATACCACAAAGCTTTGGGGTTTGCTTGTTTGTCACCATACTTCCCCTCGTTACGTCCCTTTCCCCCTTCGCTATGCTTGTGAGTTCCTCATGCAGGCTTTTGGACTGCAGCTTTACATGGAGATGCAATTGGCATCACAGATGACAGAGAAGAGAATTCTTAGGACCCAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCTTTCGGCATTGTTACTCAATCTCCTAGCATTATGGATCTTGTGAAGTGTGATGGTGCTGCACTGCTTTATGAAGGAAACTGTTGGCTGTTAGGCACAACCCCAACTGAATCACAGGTGAAAGACATTGCAGAATGGCTACTTAGTAATCATGGGGACTCAACTGGTTTGAGCACAGATAGTTTGGCTGATGCTGGTTATCCGGGTGCTGCTTTACTGGGGGATGCAGTTTGTGGCATGGCAACAGCAAGAATCTATTCAAGAGATTTCTTGTTCTGGTTCAGGTCTCACGCTGCCAAGGAGATTAGATGGGGAGGAGCCAAGCACCATCCAGAGGATAAAGATGATGGCGGAAAAATGAACCCAAGACTATCATTTAACGCATTTCTTGAAGTAGTCAAAAGCAAAAGTCTGCCATGGGAAGTGTCAGAAATCAATGCTATTCACTCATTACAGCTTATAATGAGAGATTCATTCCCAGAAGCAGAGAACTGTCGTCCTAAGACTCCAACTCATAAGAAGCAAAGTGATACTGATATTGGTGGGAATGGGATAAATGAACTCAGTTCAGTGGCATTTGAAATGGTTAGATTAATTGAGACAGCAACAGTTCCAATTTTTGGGGTTGATTCAGCTGGTCTTATCAATGGATGGAATGCCAAAATTGCTGAACTGACAGGTCTGCAAACCAGCGAAGCTATGGGAAAATCCCTCGTAAATGTTGTCCTTGAGGATTCACACGAAACTGTCGAAAATATTCTAAGAAGAGCCTTGCAAGGTCAGGAGGACAAGAATGTTGAGTTGAAATTAAGACACTTTGGGTTGCATCAGCAAAAATCAGTTGTATACATCGTAGCCAATGCCTGCACAAGTAGGGATTACACAAATGCTATTGTTGGGGTGTGCTTTGTGGGTCAAGATATCACTCGTGAGAAATCTGTTTTGGACAAATTCATCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCTCAACCCACTAATTCCACCCATATTTGCTTCTGATGAGAACGCCTCCTGCTCTGAATGGAATGCAGCCATCGAAAGGCTTACTGGTTGGAATAAAGATGAAGTTATAGGAAAAATGCTTCCTGGGGAGATCTTTGGAGGTTTCTGTCGGTTAAAAGATCAAGATACACTGACTAATTTTATGATTTTATTGTATCGAGGAATCAGTGGCCAAGATTCTGAGAAGTTCCCATTTGGATTTTTTAATAGAAAAGGGGAACTTGTCGAGGTTTTCTTGACAGCAAACAAGAGGATTGATGCAGGTGGAAATATAATTGGCTGTTTCTGCTTCTTGCAGATTGTATCGCCTGACCTGCACCGGCCCTCAGAAGGCCAAAGGCCAGAGCGCAGGGCAAGGTTTTCTGAATTCAAGGAATTAGGTTATATACTACAAGAGATAAAGAATCCTTTAAACGGTATGCGCTTCACACACAAATTAATGCAAAATACAGCTGTCTCAGAAAATCAAAAACAATTTCTTGATACTAGTGATGCTTGTGAAAGACAAATTATGACGATCATTGAGGATACAGATTTAGGAAGTATTGATGAAGGCACTTTGCAACTAAAAGTGGAGGAATTTCTTCTGGGAAATATTTTGGATGCCATTGTCAGTCAAGCTATGATCTTGATAAGCGGAAGAAACTTACAGCTCTTTCATGAAATTCCTGATGAAATCAAGACACTTACTCTATTCGGCGATCAAATTAGGCTTCAAGTGGTCTTGTCTGACATTTTGCTTAATGTAGTCAGCCATACGCCATCTCCCAATGGCTGGGTAGAAATCAAGATTTCTCCTGGGCTGAAGATAATACAAGATGGCAATGAATTTCTCCACCTGCAGTTCAGAATGACCCATGGTGGTCAAGGTCTTCCTTCTGAGGTTCTTCAGGATATGTTTGAAGGAGGGAATCAATGGACTACACAAGAAGGTCTAGGGTTATACATGTCAAGAAAAATCCTCAGTAGGATGAATGGCCATGTCCATTATATAAGAGAACACAATAAGTGTTACTTCCTCATTGATATTCAAGTTAGAACAAGAAAAGAAAGGCAACGGATTTTGCAAGCTGCAGAGACAAGCGTGTTAACTTAG 3405 0.4267 MSTGSREIVKDASSSSFSSSSTSLASNMKNNARIAERDKAIAQYSADARILAEYEQSGASGKSFDYSRSVLDPPKSVPDEKMTAYLSKIQRGGLVQPFGCMLVIDEPTYRIIGYSENCYEMLGLHGKSDSKRFVNLIGVDATTLFTPSSGTSLAKAAASREISLLNPIWVYSRTTQKSFYAILHRIDVGIVIDLEPARSSDHALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEEVQKLTGYDRVMVYKFHNDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHAKPVKVIQSQELKQPLCLVNSTLRSPHGCHTQYMANMGSIASLVLAIIVNGKDTTKLWGLLVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMEMQLASQMTEKRILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALLYEGNCWLLGTTPTESQVKDIAEWLLSNHGDSTGLSTDSLADAGYPGAALLGDAVCGMATARIYSRDFLFWFRSHAAKEIRWGGAKHHPEDKDDGGKMNPRLSFNAFLEVVKSKSLPWEVSEINAIHSLQLIMRDSFPEAENCRPKTPTHKKQSDTDIGGNGINELSSVAFEMVRLIETATVPIFGVDSAGLINGWNAKIAELTGLQTSEAMGKSLVNVVLEDSHETVENILRRALQGQEDKNVELKLRHFGLHQQKSVVYIVANACTSRDYTNAIVGVCFVGQDITREKSVLDKFIKLEGDYKAIIQSLNPLIPPIFASDENASCSEWNAAIERLTGWNKDEVIGKMLPGEIFGGFCRLKDQDTLTNFMILLYRGISGQDSEKFPFGFFNRKGELVEVFLTANKRIDAGGNIIGCFCFLQIVSPDLHRPSEGQRPERRARFSEFKELGYILQEIKNPLNGMRFTHKLMQNTAVSENQKQFLDTSDACERQIMTIIEDTDLGSIDEGTLQLKVEEFLLGNILDAIVSQAMILISGRNLQLFHEIPDEIKTLTLFGDQIRLQVVLSDILLNVVSHTPSPNGWVEIKISPGLKIIQDGNEFLHLQFRMTHGGQGLPSEVLQDMFEGGNQWTTQEGLGLYMSRKILSRMNGHVHYIREHNKCYFLIDIQVRTRKERQRILQAAETSVLT 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1249 1134 CDD HATPase_Phy-like 1002 1115 IPR044767 -
Dere10g1249 1134 Gene3D - 933 1109 IPR036890 -
Dere10g1249 1134 PANTHER OS08G0260000 PROTEIN 81 952 - -
Dere10g1249 1134 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Dere10g1249 1134 PRINTS Phytochrome signature 145 167 IPR001294 GO:0006355|GO:0009584
Dere10g1249 1134 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Dere10g1249 1134 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Dere10g1249 1134 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Dere10g1249 1134 PRINTS Phytochrome signature 245 264 IPR001294 GO:0006355|GO:0009584
Dere10g1249 1134 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Dere10g1249 1134 PRINTS Phytochrome signature 330 351 IPR001294 GO:0006355|GO:0009584
Dere10g1249 1134 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Dere10g1249 1134 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Dere10g1249 1134 SMART HKATPase_4 1003 1117 IPR003594 -
Dere10g1249 1134 Pfam PAS fold 84 197 IPR013654 GO:0006355
Dere10g1249 1134 Pfam PAS fold 620 734 IPR013767 GO:0006355
Dere10g1249 1134 Pfam PAS fold 750 869 IPR013767 GO:0006355
Dere10g1249 1134 SUPERFAMILY GAF domain-like 210 396 - -
Dere10g1249 1134 Gene3D PAS domain 88 333 - -
Dere10g1249 1134 NCBIfam PAS domain S-box protein 624 738 IPR000014 -
Dere10g1249 1134 SMART gaf_1 230 410 IPR003018 GO:0005515
Dere10g1249 1134 CDD HisKA 885 946 IPR003661 GO:0000155|GO:0007165
Dere10g1249 1134 MobiDBLite consensus disorder prediction 1 24 - -
Dere10g1249 1134 SUPERFAMILY GAF domain-like 408 585 - -
Dere10g1249 1134 Pfam GAF domain 230 399 IPR003018 GO:0005515
Dere10g1249 1134 SMART HisKA_10 892 955 IPR003661 GO:0000155|GO:0007165
Dere10g1249 1134 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1003 1106 IPR003594 -
Dere10g1249 1134 Gene3D - 211 561 IPR029016 -
Dere10g1249 1134 SMART pas_2 619 685 IPR000014 -
Dere10g1249 1134 SMART pas_2 749 819 IPR000014 -
Dere10g1249 1134 FunFam Phytochrome 763 871 - -
Dere10g1249 1134 CDD PAS 761 869 IPR000014 -
Dere10g1249 1134 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 956 1111 IPR036890 -
Dere10g1249 1134 Pfam Phytochrome region 413 586 IPR013515 GO:0006355|GO:0009584
Dere10g1249 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 866 IPR035965 -
Dere10g1249 1134 MobiDBLite consensus disorder prediction 588 607 - -
Dere10g1249 1134 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Dere10g1249 1134 FunFam Phytochrome 405 534 - -
Dere10g1249 1134 Gene3D PAS domain 619 739 - -
Dere10g1249 1134 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 230 390 IPR016132 -
Dere10g1249 1134 ProSiteProfiles Histidine kinase domain profile. 898 1117 IPR005467 -
Dere10g1249 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Dere10g1249 1134 ProSiteProfiles PAS repeat profile. 750 828 IPR000014 -
Dere10g1249 1134 FunFam Phytochrome 613 744 - -
Dere10g1249 1134 Pfam His Kinase A (phospho-acceptor) domain 898 955 IPR003661 GO:0000155|GO:0007165
Dere10g1249 1134 CDD PAS 628 734 IPR000014 -
Dere10g1249 1134 PIRSF Phytochrome_conventional 13 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Dere10g1249 1134 Gene3D PAS domain 763 874 - -
Dere10g1249 1134 ProSitePatterns Phytochrome chromophore attachment site signature. 330 339 IPR013516 -
Dere10g1249 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 199 IPR035965 -
Dere10g1249 1134 Gene3D - 405 578 IPR043150 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1249 Dere-ChrDere10 23523453 23528658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1249 20 1117 Histidine Kinase Gene Family AT4G18130 65.081 0.0 1501