Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1234 ATGGGAGAAGAGCTTTCTGCATTACATGGCCATATTATATGCAACTGTACCTTTAGCTGCTGTGAAAAGGCCCTCCGAAAGTTCTACACCCGATCCACGAAGCCTCGTGTAGCAGGATCTCTATTCTTCTTCTCATTATCTTCATGTGGGATAAGGAGCAGCTTATACATTCCAGAGTTAGAAGGCAAATCGACGCTACGCTTTATTGCGGTGGAGGGTGCTTTGTTTCATCGTACATTTTTGTTTGGGACCATGCCTCGAAAGGTGAACTATGGACTTGATTATGATGACTATGATGACTATGATGATTATGAAGACTATGATTACGATGTTGACATAGAAGAATATGAAGGACCTGAACCTGATAAGAAGCAAGAGAGTACAGGTCTTTGGCAATGCTCCATTTGCACTTACGACAATGATGAGAGTATGAATGTATGTGATATTTGCGGTGTTGTACGTTATCCTTTGGTTAGCACAGGAGCTTCAAACAATAATAAAACAGTCCCTTTCAAGTTTGATGTTCCATCCCCAGATGATGTTGTTTCTAATGGACTGCGATCTTCCAAAATGGGTTTGAAAGGCACAGTTGCTAACTCTAAAAGTTCTCACGTTTCGTCAAGCATTACTCAGAAAAATGAACTTAAAGTACTGTCAAATGCTGAAAGTTCAGACAGCTCATCATCTTTGTTGCAGAAAGGCAGGCAGGATAGTTTAGCAGCGAGCAAGCTTTCTAAGACTGTACCATTTGATCTGGAAACAAGTGATGAAACTTCAGACAGCTTATCAGCATCTTCTGGAATGGGTGATGGTAAAAAAGTGACTAAAACCAAGTCTTTGAAAGAAGGAAAAACTGATACTCAATCAAGTGATGAAATCTCGGGTAGTTTGTCTGCAGTGCTAAAAGTCGGAGACAGTGGTGATGAAATTAATTGCTCTTCTAGCAAAGATGTCAAACCTCAAAGTAGTTTGAACAACATGGCTGTTGATGTAAGATCTGGAAAGTTAAATAATACTATTTCTAAAGGACCTCTTCCGCACGTGCCTTATAAACCAGAAAAATGGATGCTCCCTCAACAAGCTGAAGATACGTTGACTCAGCTGAATCTTGCAGTTGTTGGCCATGTTGATTCTGGGAAGTCAACACTCTCAGGTAGATTACTACACCTATTGGGACAAATTACCCAGAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGTAAGGGATCCTTTGCTTATGCTTGGGCATTGGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACTATGACGGTGGCTGTTGCATATTTTGACACTAAGAAATATCATGTTGTTGTGCTTGACTCCCCGGGCCACAAAGATTTCGTGCCAAACATGATTTCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATTGATGCCTCGGTTGGTTCATTTGAAGCAGGTATGGATAGTAGCAAAGGACAAACAAGGGAACATGCACAGCTTATCAGAAGTTTTGGTGTTGATCAGGTTATCGTTGCAGTAAATAAGATGGATGCTGTGGAATACTCCAAAGATCGATTTGATTTAATTAGACAGCAATTGGGAGTGTTTCTCCGTACTTGTGGTTTCAAGGATTCTTCTGTCTCATGGATTCCTCTGAGTGTCATAGAAAATCAAAATTTAGTGGCATCTCCTTCTGATGTTCGTTTCAAATCCTGGTATAAAGGACCTTATCTGTTAGATGCAATCGATTCGCTCAGACCTCCTACTAGAGAATTTTCAAAGCCTCTACTAATGCCAATATGTGATGTTATCAAGGCATCTACGCTTGGACAGGTGTCTGCTTGTGGTAAATTGGAAGCTGGAGCTCTTCGAAGTGGATCAAAGGTCTTAGTTATGCCTTCAGCTGTTGTGGGGACAGTACGCACATTGGAGCGCAATTCTAATACCTGCACTATTGCAAGGGCTGGAGATAATGTAGCTGTCACGTTGAATGGTGTAGATGCAAGTCATGTAACGGCAGGAGGTGTATTATGCCATCCTGATTTTCCTGTTGCGGTGGCAAAACATTTGGAATTGAGGTTGCTTGTGTTGGAAGGTTCAAATCCCATATTGGTAGGCTCACAGTTGGAGTTTCATATACACCATGCAAAGGAGCCTGCTAAAGTTTCAAGACTTTTATTAGTACTTGATCCAAAGACCGGGAAGGAGACAAAAAAGTCCCCTCGCTGTCTCATTGCAAAGCAGAGTGCTGTAATCGAGGTAATTTTGCAGGAGCCAGTCTGTGTGGTAGAATTCTCTAGCTGTAAGGCTCTTGGAAGGGTGTCCCTAAGAGCATTAGGACGAACAATTGCTGTTGGACTTGTGACACGGATAATCGAAGAGCAAGAGTAG 2391 0.4174 MGEELSALHGHIICNCTFSCCEKALRKFYTRSTKPRVAGSLFFFSLSSCGIRSSLYIPELEGKSTLRFIAVEGALFHRTFLFGTMPRKVNYGLDYDDYDDYDDYEDYDYDVDIEEYEGPEPDKKQESTGLWQCSICTYDNDESMNVCDICGVVRYPLVSTGASNNNKTVPFKFDVPSPDDVVSNGLRSSKMGLKGTVANSKSSHVSSSITQKNELKVLSNAESSDSSSSLLQKGRQDSLAASKLSKTVPFDLETSDETSDSLSASSGMGDGKKVTKTKSLKEGKTDTQSSDEISGSLSAVLKVGDSGDEINCSSSKDVKPQSSLNNMAVDVRSGKLNNTISKGPLPHVPYKPEKWMLPQQAEDTLTQLNLAVVGHVDSGKSTLSGRLLHLLGQITQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASVGSFEAGMDSSKGQTREHAQLIRSFGVDQVIVAVNKMDAVEYSKDRFDLIRQQLGVFLRTCGFKDSSVSWIPLSVIENQNLVASPSDVRFKSWYKGPYLLDAIDSLRPPTREFSKPLLMPICDVIKASTLGQVSACGKLEAGALRSGSKVLVMPSAVVGTVRTLERNSNTCTIARAGDNVAVTLNGVDASHVTAGGVLCHPDFPVAVAKHLELRLLVLEGSNPILVGSQLEFHIHHAKEPAKVSRLLLVLDPKTGKETKKSPRCLIAKQSAVIEVILQEPVCVVEFSSCKALGRVSLRALGRTIAVGLVTRIIEEQE 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1234 796 CDD HBS1_C_III 683 791 - -
Dere10g1234 796 Gene3D Translation factors 593 682 - -
Dere10g1234 796 SUPERFAMILY Ran binding protein zinc finger-like 127 154 IPR036443 -
Dere10g1234 796 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 365 596 IPR000795 GO:0003924|GO:0005525
Dere10g1234 796 FunFam Translation elongation factor EF-1 592 682 - -
Dere10g1234 796 CDD EF1_alpha 369 588 - -
Dere10g1234 796 FunFam Elongation factor 1 alpha-like protein 358 589 - -
Dere10g1234 796 PANTHER TRANSLATION FACTOR 364 791 - -
Dere10g1234 796 MobiDBLite consensus disorder prediction 192 211 - -
Dere10g1234 796 MobiDBLite consensus disorder prediction 252 293 - -
Dere10g1234 796 ProSiteProfiles Zinc finger RanBP2 type profile. 127 156 IPR001876 -
Dere10g1234 796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 610 IPR027417 -
Dere10g1234 796 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 688 792 IPR009001 -
Dere10g1234 796 Pfam Elongation factor Tu C-terminal domain 686 791 IPR004160 -
Dere10g1234 796 SUPERFAMILY Translation proteins 587 682 IPR009000 -
Dere10g1234 796 MobiDBLite consensus disorder prediction 252 272 - -
Dere10g1234 796 MobiDBLite consensus disorder prediction 274 288 - -
Dere10g1234 796 FunFam elongation factor 1-alpha isoform X4 686 795 - -
Dere10g1234 796 ProSitePatterns Zinc finger RanBP2-type signature. 131 150 IPR001876 -
Dere10g1234 796 Gene3D - 356 589 IPR027417 -
Dere10g1234 796 SMART zf_4 129 153 IPR001876 -
Dere10g1234 796 Pfam Elongation factor Tu GTP binding domain 368 584 IPR000795 GO:0003924|GO:0005525
Dere10g1234 796 Gene3D Translation factors 686 796 - -
Dere10g1234 796 PRINTS GTP-binding elongation factor signature 428 436 IPR000795 GO:0003924|GO:0005525
Dere10g1234 796 PRINTS GTP-binding elongation factor signature 369 382 IPR000795 GO:0003924|GO:0005525
Dere10g1234 796 PRINTS GTP-binding elongation factor signature 464 475 IPR000795 GO:0003924|GO:0005525
Dere10g1234 796 PRINTS GTP-binding elongation factor signature 509 518 IPR000795 GO:0003924|GO:0005525
Dere10g1234 796 PRINTS GTP-binding elongation factor signature 448 458 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1234 Dere-ChrDere10 23269034 23286168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1234 126 794 Eukaryotic Initiation Factors Gene Family AT5G10630 59.407 0.0 803