Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1233 ATGTTATACAATACGGTGTACTGTGCATTAAATCAAAGTGGACTCTTCTTTGATTCTACTGAGCTTTGCAAGGGGCTACCTACAACCAGGCACATTGAGTATTGCATGCGTAGAGTAAATTTGCTGCGGCACTTTGGTGTTAAGCCTATTCTTGTATTTGATGGAGGTCTCCTACCAATGAAGAGCGAACAAGAGAACAAACGCGCAAGGGTGAGAAAGGAAAATCTTGCACGTGCAGTTGAACATGAATCAAATGGAAATTCTGCTGCCGCTTTTGAGTGCTACCAGAAAGCTGTTGATATCTCACCTCTGGTTGCATGTGAGCTAATTCAGGTGTTGAAGCAGGAGAATGTGTGTTATATTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAGCCAGCAAACAGGTTGAAGCGGTTATAACTGAAGACTCTGATCTCATACCATTTGGTTGCCCAAGAATTTTCTTTAAAATGGACAAGGTCGGTCAAGGTGTTGAGTTTCGGTATTCCATGCTACAAAAGAACAAGGAGCTCAGTTTTGAGGGGTTTACCAAACAAATGCTTCTCGAAATGTGTATATTGAGTGGTTGTGACTATCTGCAGTCCTTGCCAGGTATGGGCCTCAAAAGGGCTCATGCAATCATTAAAAAGTTCAAAAGTTATGACAAGGTTCTTAAGCACTTGCGATTCAGTGGTGTTTCTGTCCCTCCCTCTTATGAAGATTCATTCAAGAAGGCTATATTGACTTTTCAATATCAACGGGTTTATGATCCAATCAGTGAAGATATTGTTCATTTGTCTGATATACCCACTGATATTGGTGATGACTTAGACTTCTTAGGCCCATATCCTTTATTTTAA 873 0.4112 MLYNTVYCALNQSGLFFDSTELCKGLPTTRHIEYCMRRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARVRKENLARAVEHESNGNSAAAFECYQKAVDISPLVACELIQVLKQENVCYIVAPYEADAQMTFLAASKQVEAVITEDSDLIPFGCPRIFFKMDKVGQGVEFRYSMLQKNKELSFEGFTKQMLLEMCILSGCDYLQSLPGMGLKRAHAIIKKFKSYDKVLKHLRFSGVSVPPSYEDSFKKAILTFQYQRVYDPISEDIVHLSDIPTDIGDDLDFLGPYPLF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1233 290 CDD H3TH_EXO1 190 261 IPR037315 GO:0003677|GO:0035312
Dere10g1233 290 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 49 68 IPR006084 -
Dere10g1233 290 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 192 207 IPR006084 -
Dere10g1233 290 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 113 130 IPR006084 -
Dere10g1233 290 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 134 154 IPR006084 -
Dere10g1233 290 Pfam XPG N-terminal domain 20 74 IPR006085 GO:0004518
Dere10g1233 290 ProSitePatterns XPG protein signature 1. 47 61 IPR019974 GO:0016788
Dere10g1233 290 Gene3D - 189 257 - -
Dere10g1233 290 CDD PIN_EXO1 7 178 IPR044752 GO:0046872
Dere10g1233 290 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 187 279 IPR036279 -
Dere10g1233 290 Pfam XPG I-region 117 202 IPR006086 GO:0004518
Dere10g1233 290 FunFam Exonuclease 1, putative 5 183 - -
Dere10g1233 290 SMART HhH_4 189 222 IPR008918 GO:0003677|GO:0003824
Dere10g1233 290 SMART xpgineu 114 184 IPR006086 GO:0004518
Dere10g1233 290 Gene3D - 3 188 - -
Dere10g1233 290 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 20 275 IPR006084 -
Dere10g1233 290 SUPERFAMILY PIN domain-like 21 202 IPR029060 -
Dere10g1233 290 FunFam exonuclease 1 185 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1233 Dere-ChrDere10 23264567 23268817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1233 29 243 Core DNA Replication Machinery Family AT5G26680 26.941 3.62e-18 82.0