Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1226 ATGGCCTTCCCAAACCAACCCATGTCAGATTCATCGCCACAGAGAAAGATGGGGAGAGGGAAGATTGAGATCAAGAGGATCGAGAACACCACAAATCGCCAAGTGACTTTCTGTAAGCGCAGAAATGGCCTCCTCAAGAAGGCTTATGAACTCTCTGTGCTTTGTGATGCTGAGGTCGCTCTCATCGTCTTCTCCACTAGAGGTCGCCTCTATGAGTATGCTAATAACAGTGTCAAAGCAACTATCGAGAGGTACAAGAAAGCTTGTTCAGATTCCACTGGAGGTGGATCCACTTCTGAACTTAATGCTCAGTATTATCAGCAAGAAGCTGCTAAACTGCGTGCCCAGATTAGTAACCTGCGGAATAACAACAGGCAAATGATGGGTGAGACTTTGGCCAGTTTGAGTGCTAAGGACCTCAGAAACTTGGAGAATAAGTTAGAAAGAGGGATTAGCAGAATTCGTTCCAAAAAGAATGAGCTTCTCTTTGCAGAAATTGAGTACATGCAGAAGAGAGAGATAGACTTGCACAACAACAATCAGCTCCTTCGAGCTAAGATAGCTGAAAGTGAGAGAAACCAGCAGCAGCAACAGGAGGAGCAGCATAACATGAATGTGTTGCCTGGAGGAGCAGATTATGAAGCAATGCAATCTCATAATCAGCAACACCACCAATTTGATTCTCGAGGCTTCTTCCAAGTCACTGGATTACAACCTACCAATCACTATGCTCCCCAAGACCACATGTCTCTCCAATTAGTGTAG 765 0.4497 MAFPNQPMSDSSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSTGGGSTSELNAQYYQQEAAKLRAQISNLRNNNRQMMGETLASLSAKDLRNLENKLERGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNQQQQQEEQHNMNVLPGGADYEAMQSHNQQHHQFDSRGFFQVTGLQPTNHYAPQDHMSLQLV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1226 254 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Dere10g1226 254 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Dere10g1226 254 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Dere10g1226 254 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Dere10g1226 254 FunFam agamous-like MADS-box protein AGL11 29 112 - -
Dere10g1226 254 Coils Coil 140 160 - -
Dere10g1226 254 Coils Coil 103 130 - -
Dere10g1226 254 CDD MADS_MEF2_like 18 92 IPR033896 GO:0000977|GO:0045944
Dere10g1226 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 204 - -
Dere10g1226 254 SUPERFAMILY SRF-like 18 90 IPR036879 GO:0003677|GO:0046983
Dere10g1226 254 MobiDBLite consensus disorder prediction 1 21 - -
Dere10g1226 254 Coils Coil 180 205 - -
Dere10g1226 254 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Dere10g1226 254 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Dere10g1226 254 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere10g1226 254 Pfam K-box region 102 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere10g1226 254 Gene3D - 29 94 IPR036879 GO:0003677|GO:0046983
Dere10g1226 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1226 Dere-ChrDere10 23157623 23167990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1226 10 254 MADS-box Gene Family AT3G58780 63.415 1.30e-106 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere10g1226 K-box 2.1e-27 No_clan