Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1195 ATGCTTTCTAAGCACAGAAAAGCCACAATGTTCAGCCACAACACATCACAGCAAATTTCTCTGTTCTCTCTCTCTCTCTCTCTCAAACGCTACAACTTCATTTTCTCTCCGTTGTTCCCTCGTCCTGTATCTTTGTCGGCGATGGCCGATCATTCAGGAAGTAACGGAACCCACGATGCGGTCTTGAACGTCAATGGCGAAGCCCACCGTAACCCCAATTGCTCCGCCTCTAAAACAAACCAAGACTCAGGCATCTATGTTTCTGTCCCTTTCTTGCAGAAGTTGGTGGCAGAGTTGGTGGGGACGTACTTCCTGATATTTGCAGGGTGTGGATCGGTGGTGGTGAACCTGAACAAAAACAACGTTGTGACGCTTCCTGGGATATCCATAGTATGGGGTCTTGTGGTTATGGTTCTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACTCTTGCTTTTGCTTCCACCAGAAGGTTTCCCCTCAAACAGGTGCCGGCCTATATATTAACTCAGGTTCTTGGATCCACACTTGCGAGTGGAACTCTGAGACTTCTGTTCATGGGTGACCATGACAAATTTGCAGGAACACTTCCTGGTGGGTCAAACCTGCAGGCCTTTGTGGTTGAATTCATTATCACCTTCTACCTCATGTTCGTCATATCCGGCGTCGCTACTGACAACAGAGCGATTGGTGAGCTGGCTGGGCTCGCAGTTGGGTCTACCGTGTTGCTGAATGTGATGTTTGCGGGGCCTATCACAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGGCCTGCAATTGTGTCCCATAAATACACTGGAATTTGGATATACTTGCTTTCACCAGTTCTGGGAGCAGTGGCTGGAGCATGGGTTTATAATATCATAAGGTACACAGACAAGCCATTACGTGAGATCACAAAGAGTGCCTCATTCCTCAAAGCATCAAGCCGCGGTGGTGCCTCCAAGTGA 990 0.4848 MLSKHRKATMFSHNTSQQISLFSLSLSLKRYNFIFSPLFPRPVSLSAMADHSGSNGTHDAVLNVNGEAHRNPNCSASKTNQDSGIYVSVPFLQKLVAELVGTYFLIFAGCGSVVVNLNKNNVVTLPGISIVWGLVVMVLVYSVGHISGAHFNPAVTLAFASTRRFPLKQVPAYILTQVLGSTLASGTLRLLFMGDHDKFAGTLPGGSNLQAFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSHKYTGIWIYLLSPVLGAVAGAWVYNIIRYTDKPLREITKSASFLKASSRGGASK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1195 329 CDD MIP 93 302 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere10g1195 329 NCBIfam MIP family channel protein 97 299 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere10g1195 329 PRINTS Major intrinsic protein family signature 93 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere10g1195 329 PRINTS Major intrinsic protein family signature 245 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere10g1195 329 PRINTS Major intrinsic protein family signature 169 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere10g1195 329 PRINTS Major intrinsic protein family signature 282 302 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere10g1195 329 PRINTS Major intrinsic protein family signature 214 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere10g1195 329 PRINTS Major intrinsic protein family signature 132 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere10g1195 329 Pfam Major intrinsic protein 88 299 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere10g1195 329 Gene3D Glycerol uptake facilitator protein. 55 314 IPR023271 -
Dere10g1195 329 SUPERFAMILY Aquaporin-like 87 313 IPR023271 -
Dere10g1195 329 ProSitePatterns MIP family signature. 150 158 IPR022357 -
Dere10g1195 329 PANTHER AQUAPORIN NIP2-1 73 320 IPR034294 -
Dere10g1195 329 FunFam Aquaporin NIP1-1 55 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1195 Dere-ChrDere10 22420848 22424283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1195 73 329 Major Intrinsic Protein MIP AT5G37820 60.153 3.51e-106 311