Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1189 ATGGATGAAGCACAGGGTAGTTCTGGTTCCTTGCCTCCTTTCTTGGCGAAGACTTATGAGATGGTGGAGGATCCTTCCTCGGATTCGGTTGTTTCTTGGAGTAGCACCAATACAAGTTTCGTCGTATGGGATCCAACAGAATTTGCAAGGGATTTGCTACCAAGATTCTTTAAGCATAATAACTTCTCAAGTTTCATCAGACAGCTTAACACTTACGGTTTTAGAAAAGTTGACCCGGAACGGTGGGAGTTTGCAAATGATGATTTTATAAGGGGTCAGCCACATCTTTTGAAGAATATCCATAGGCGAAAACCGGTTCATAGTCATTCTTTACAGAATCTCCAAGCACATGGAGCTTCTCCATTATCAGAATCAGAAAGGCAGAGTTTAAAAGATGAAATAGAGAGGCTTAAACACGAAAAAGAAGGACTAGTTTTAAAGTTACAGAGATATGAACGGGAGTGGCAAACATGTGAGATACAAATACATTGCTCAAAAGACCGTTTGGAAAAGTTGGAACAGAGACAGCAAAAGATGGTCTCTTCTGTTTCTCGAGCCTTGCAGAAACCTGGTGTTGCTTTAAATCTCTTGTCACTTTCAGAATCCCTAGATAGAAAACGAAGGTTGCCAAGAGGTGGGTACTTTGGTGATGAAGCTAACATTGAAGATCCAATGGAGACTTCCCAAATGTTACCTAGAGAAAATGTAGAGAGTACCTCTGTTCTGACATCGAACATGGAGCGATTGGATCAGCTGGGGTCATATCTGGTATTCTGGGAGAACATTGTAAATGACATTGGTACTGATACCTTTGTTCAAAGTCATTCTAACATGGACTTTGACGAATCTACAAGTTGTCCTGATAGTCCAACTATATCATGTGTGCAACTGGATGTTGAAATCCAGCCAAAGTCATCTGGAATCGACATGAACTCCGAGCCTGCTGCATCTGCTGTTCCTGAGCCTGTTGCATCAAAAGAACAACCTGTGGGAACAGCCACTGTGGCTACTGGTGTTAATGATGTTTTCTGGGAACAGTTCTTAACAGAGAATCCTGGTTCATCAGAGACGCAGGACGTACAATTAGAAATAAAGGATTCTGATGCCAGAAAGAATGAAGGAAAAACTAGTGAGCGAAATAAATTTTGGTGGAATGTAAATAATCTTTCAGAACAGATAGGGCATCTTAGTCAAGCAGAGAAAACTTAA 1209 0.4111 MDEAQGSSGSLPPFLAKTYEMVEDPSSDSVVSWSSTNTSFVVWDPTEFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPERWEFANDDFIRGQPHLLKNIHRRKPVHSHSLQNLQAHGASPLSESERQSLKDEIERLKHEKEGLVLKLQRYEREWQTCEIQIHCSKDRLEKLEQRQQKMVSSVSRALQKPGVALNLLSLSESLDRKRRLPRGGYFGDEANIEDPMETSQMLPRENVESTSVLTSNMERLDQLGSYLVFWENIVNDIGTDTFVQSHSNMDFDESTSCPDSPTISCVQLDVEIQPKSSGIDMNSEPAASAVPEPVASKEQPVGTATVATGVNDVFWEQFLTENPGSSETQDVQLEIKDSDARKNEGKTSERNKFWWNVNNLSEQIGHLSQAEKT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1189 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere10g1189 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere10g1189 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere10g1189 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere10g1189 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere10g1189 402 Gene3D - 7 104 IPR036388 -
Dere10g1189 402 Coils Coil 127 154 - -
Dere10g1189 402 MobiDBLite consensus disorder prediction 350 377 - -
Dere10g1189 402 FunFam Heat shock transcription factor 1 7 104 - -
Dere10g1189 402 MobiDBLite consensus disorder prediction 361 377 - -
Dere10g1189 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 230 IPR027725 -
Dere10g1189 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere10g1189 402 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
Dere10g1189 402 MobiDBLite consensus disorder prediction 308 328 - -
Dere10g1189 402 Coils Coil 169 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1189 Dere-ChrDere10 22352454 22353770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1189 7 402 HSF AT4G18880 52.078 9.48e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere10g1189 HSF_DNA-bind 1.3e-32 CL0123