Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1185 ATGGCTTCGGGGGCTATATTTTCGTCGCTGCGGCGGAGGAGGTCGCCGTCGTTGGAAGCCTTTCTTGCGCCGGTGGACTTGTCTGACGTTGCTCTGGTTCAAACCCTCGTCTCTGTCGCTAGCGAGCTCGTCACGTGCTTTTCCAAACGCTCCTTCTTCTTCCAGCGCAAGAATTCGCGGTCGCTTGTAAGAAAGGTCGAGGTCTTTCAGCTGCTTTTGGAGTATCTGAGCGATACCGGCGCGTGTATTCCACCGACGGCGGTGCTCTGTTTGAAGGAGTTTTATTTGCTACTGTACCGGTCTAAGATTCTTCTCGACTATTGCGCACGATCGAGTAAGTTATGGCTTTTGCTTCAGAACCATTCAATTTCTGGCCATTTCCATGATTTGGACCGAGAAGTATCAACTCTTCTGGATGTCTTTCCGATTAACGATGTCGAATTGAGTGAGGATATTAGAGAACAGATTGAGCTATTGCAGAAACAGTCGAGGAGGGCTAAGTTGTTCATAGACAAGAAAGATGATGATCTCAGGATTCGTTTCTTTTCATTTCTTGATGAGTTTGAGAATGGGAAAATTCCTGACTCATCAGAACTAAGGTCTTTCTTTGTGGAGAAATTGAAGATTCTGGATGCTAGAAGTTGCAGAAATGAAATTGAATCTTTGGAGGAGCAGATTGTGAATCACGAGGGAGACGTTGAGCCTACAATTTCTGTGCTTAATGGGCTTGTTGCTTTGACACGGTATTGCAGGTTTTTGCTTTTCGGATTTGAGGAAGATGAGCTAGATTTAAGAAGTGGAAATAAGAAAAAACCCAAAAGGGGATTGATTAGTCGAGAGATTGCTGAAACATTCTTAAGTATTCCAAAGGACTTTTGCTGCCCAATAACATTGGATTTGATGCGAGATCCTGTTATAATCTCCACAGGACAGACATATGATCGAAGTTCCATATCCCGGTGGATAGAAGGCCATTGCACTTGCCCGAAAACTGGGCAAATGCTTGCTAGCACACGCCTTGTTTCTAATCGATCTCTTAGGAATTTGATCATGCAATGGTGCACTGCGCATGGAATCCCCTATGACCCGCCGGAGGTCATGGATCCTTCAATTGAAATTTTTGCTTCAGCTTCTCCTACCAAAGCTGCCCTTGAAGCCAACAGAGCAACGGCAGCACTTCTCATTCAGCAGCTTGCAGATGGGTCACAAGCTGCAAAGACTGTAGCTGCGCGGGAGATACGACTGCTAGCTAAAACGGGCAAAGAAAATCGTGCCTTCATTGCAGAAGCTGGGGCAATTCCTCATCTTCGAAAGTTACTTTCATCTCCTAATGCTATTGCCCAGGAAAATTCTGTGACTGCATTGCTCAACCTTTCAATTTTTGAGAAAAACAAAAGTCGGATAATGGATGAGGAAGGGTGTCTGGGATCAATAGTTGATGTTTTGAGATTTGGGCACACAACGGAGGCAAGGGAAAATGCTGCCGCAACATTGTTCAGTCTCTCTGCTGTCCATGACTATAAGAAGAGGATTGCAGATAAGTTTGGAGCTGTTGAAGCCCTGGCAGATTTGTTGCAAGAGGGGACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTTTCCACCCACACTGAGAATTGTGTTAGGATGATTGAAGCAGGGGCTGTAACGGCTTTAGTTGCAGCTTTGGGAAATGAAGGAGTTGCTGAGGAAGCAGCAGGTTCCTTGGCCTTGATTGTTCGGCAGACTATTGGGGCCAAGGCTGTGGTTAGGGAAGAAGCAGCTGTAGCTGGATTAATTGGAATGATGCGTTGTGGGACACCAAGAGCTAAGGAGAATGCAGTTGCAGCCTTGTTTGAGTTGTGCCGGAGTGGTGGTGCAGCTGCAACTGAAAGGGTGGTTAGAGCACCAGCTTTGGCCGGATTACTTCAAACCCTGCTTTTTACCGGGACAAAGCGGGCAAGAAGAAAAGCAGCGTCGCTTGCTAAGGTGTTTCAGAGATGTGAAAATGCAATGATACATTATGGTGGTTTAGGTGTTGGATATGCATATGCAAGCAATCCTGCTCCGGAAAGGGATACAAGCTTTGCTGGCGATGTCCCCGCATCGTCACCCATGCCTGTACCTGTTGTGTAG 2145 0.4629 MASGAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLVSVASELVTCFSKRSFFFQRKNSRSLVRKVEVFQLLLEYLSDTGACIPPTAVLCLKEFYLLLYRSKILLDYCARSSKLWLLLQNHSISGHFHDLDREVSTLLDVFPINDVELSEDIREQIELLQKQSRRAKLFIDKKDDDLRIRFFSFLDEFENGKIPDSSELRSFFVEKLKILDARSCRNEIESLEEQIVNHEGDVEPTISVLNGLVALTRYCRFLLFGFEEDELDLRSGNKKKPKRGLISREIAETFLSIPKDFCCPITLDLMRDPVIISTGQTYDRSSISRWIEGHCTCPKTGQMLASTRLVSNRSLRNLIMQWCTAHGIPYDPPEVMDPSIEIFASASPTKAALEANRATAALLIQQLADGSQAAKTVAAREIRLLAKTGKENRAFIAEAGAIPHLRKLLSSPNAIAQENSVTALLNLSIFEKNKSRIMDEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKRIADKFGAVEALADLLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVAALGNEGVAEEAAGSLALIVRQTIGAKAVVREEAAVAGLIGMMRCGTPRAKENAVAALFELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLAKVFQRCENAMIHYGGLGVGYAYASNPAPERDTSFAGDVPASSPMPVPVV 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1185 714 PANTHER U BOX DOMAIN-CONTAINING 57 671 - -
Dere10g1185 714 Pfam U-box domain 288 357 IPR003613 GO:0004842|GO:0016567
Dere10g1185 714 Gene3D - 517 670 IPR011989 -
Dere10g1185 714 FunFam RING-type E3 ubiquitin transferase 283 360 - -
Dere10g1185 714 FunFam RING-type E3 ubiquitin transferase 363 684 - -
Dere10g1185 714 SMART Ubox_2 291 353 IPR003613 GO:0004842|GO:0016567
Dere10g1185 714 ProSiteProfiles U-box domain profile. 287 360 IPR003613 GO:0004842|GO:0016567
Dere10g1185 714 CDD RING-Ubox_PUB 289 340 IPR045210 -
Dere10g1185 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Dere10g1185 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Dere10g1185 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 359 IPR013083 -
Dere10g1185 714 Gene3D - 390 516 IPR011989 -
Dere10g1185 714 SUPERFAMILY ARM repeat 393 668 IPR016024 -
Dere10g1185 714 Coils Coil 212 232 - -
Dere10g1185 714 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Dere10g1185 714 SMART arm_5 585 626 IPR000225 GO:0005515
Dere10g1185 714 SMART arm_5 505 545 IPR000225 GO:0005515
Dere10g1185 714 SMART arm_5 546 584 IPR000225 GO:0005515
Dere10g1185 714 SMART arm_5 420 460 IPR000225 GO:0005515
Dere10g1185 714 SUPERFAMILY RING/U-box 276 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1185 Dere-ChrDere10 22325013 22327157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1185 1 714 U-box Gene Family AT1G29340 69.619 0.0 951