Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1175 ATGATCGAAACGGTTCGCCCCGCTTCCTTTTCTGATTCAGAGCTTTCAGTTGAGCTCAAATGGTGCTTTCTTAATCCGATGGGTTGGATGAGAAACTGGGTTTCTACTTTCGTATATGGAGTAGCTGGCGGGAAGTTTGGGGAATTGATAGACCCTCTTGAAATAGAAGATTCTGTTGTCCGACTTGTTAATGTGCTGATCATGACAAGGGCTGTGCGCAATAGGATACTTAAGGATGCGAATGGTGATATTAGTGATCATCTACGCAACCACATCCATTTAACCAATTGCATTCACTTGAAGAACCATATGCACAAGAACAGCCCCATTCTTGCTGATAGGTCGCTTATGAGAGACCTCGTTGTGCTGCAGAGGTCACGCTCCCTGAGAGATCCTTCAGCAAGTCCTCCTTCGTGGCATTCGCCTTCTATAATTGATGTGCTTTCCAAGAGGGTTGAAAATGATGCCATGGTTCCGGAGGGAAGAAGGTCTGTAGTAATTGAACGCCAGAAAGAAGGAAGGCGATTATCGGGAACCTCACCACCCGTGGGTAGTTTAGGTCCATCAAAAGTTGCTCCAGGTGAGGTAAGCCGGGATAATGATGGAGGGTCAGCAAGTAGACACCCTTATAGCAGGAGTGGAATTGGGGCTGGGAGGAAAATTGGGAGAGAAGGATCAGGTCGGAAGAGTGACAGGCCTGATTATTTGGGTCTCAATGAAGAAGAACTTCACAATCAACTTGGCAAAGATTTGGCTGAAGAGGTTGTTTCAAGGCATTCTGAATCTAAAGAGAGAAAGAGCAAACAAAGGGGGAAGCAAGTTCAAGATGTTCAAGCTAAGACCCTTTCTGAGCAGTTGAATGATGTTCCGCTGGATAGTGATGATTTACAATCTTCAAACAACAATCTTCGTGCAAGGTTTCCAAGGCAGGAGAAAATTATTCCAGAGCCAGAAGTCAGCATGCGTGCTCACGGCAAAGGAATGAATCGGGTGAAAAGGCGTAGATTTCGAAGTGCAAGAAGAGCTCGGGCTTCTGTGGAATCTAGAGATGCTGGAGCTGAGAATGAACTGTCTGTCGCTTCCAACTCATTAGCTCATGGTTCAACCCACCATAAATATCATATGGATGAGGCAGATGAATATGCAGATGACAATGTCACCAGGGCACCCAAAAATGGGTGTGGCATTCCTTGGAACTGGTCTAGAATTCATCACAGAGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTATCTTGTGGTTTATCTGACTCAAGAATAAAGAAAGGGGCATTGGATGCCAATGGAAGAAATACTTCTGACATGCCTGTGGCATCTGACCAGTCAAGCTCATTTACTAGGTCTGATGCTGAGGCACTCCCTTTACTAGTGGAGGCATCTGGATCTCAGGGAAGCACTGAGAATGCCTGTTGGGGGCATGACTATTCTGGGGAACTTGGTATTTATGCTGATAATTTATTCAAGCATGATTTTGATTCTGACCTCGCTTCTGAAGCTAGATCTGGCGATCAGCATAAGTTGAGAGGGAATCGCCATAGCAGGCACCAGAGCCTAACACAAAAATATTTGCCACGAACCTTCAGAGATTTGGTTGGGCAAAATTTGGTGGCACAAGCTCTTTCAAATGCCGTCATGAGAAGGAAAGTTGGATTTTTGTATGTGTTTTATGGACCCCATGGCACTGGAAAAACTTCCTGTGCTCGTATATTTGCTAGAGCTTTAAATTGTCATTCTTCTGAGCACCCAAAACCATGTGGCTTCTGCAATTCTTGTGTAGCACATGATATGGGCAAGAGTAGAACTATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAAAGCATCATGGATCTACTAGACAACATGATTGTTTCCCAGCTTGCGTCACAGTACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAACTGATTGCTGGAGTGCCATATCGAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATACTTGTTAGTTCAACTCTTGATGGATTGCCTCATATAATCATATCCAGGTGTCAGAAATTCTTTTTTCCAAAGCTGAAGGATTCAGACATCATGTATACATTGCAGAGAATTGCAACCAAAGAAGGTCTAGAAATTGATAGGGATGCCCTGAAACTTATTGTATCAAGATCAGATGGATCATTGAGAGATGCTGAGATGACTCTTGAACAACTTAGTTTGCTTGGTCAGAGAATTTCAGTTCCTCTTGTCCAGGAATTAGTAGGGCTAATCTCTGATGAAAAATTGGTGGATCTACTTGATTTGGCATTATCTGCAGACACAGTTAATACTGTGAAGAATTTGAGAGTGATAATGGAAACTGGTGTTGAGCCGTTAGCTTTAATGTCACAGCTTGCTACAGTAATTACTGACATACTTGCTGGGACCTATGATTTCACAAGAGAAAAGCAGAGGAGGAAGTTTTTTCGGAGACAGCCATTATCAAAAGAAGACATGGAAAAGCTACGCCAAGCTTTGAAAACTTTATCCGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAATTAACCTGGCTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATATGTTGCCTACTTCATCTGATAATAGTTTCAATCATAGTCCTTTGGCCTTAAATAATGCAGATGGGAGAGAAGCAGCCAGAAGAACAAGTACTAGTGTTGAAATTCCTAGGAAAGAGAGGCGTTTATCAATGGATGCTAGAATGGAGAATTTCCATGCTGGAAGTTCAGCTGATGGTATGGCAAAGGGTCATAGTTCAGATAATAAAAGACTTGCCGTGGCTGGTTTTGCTCCTCAACAGACATCTTCACATGTTACCAATATGATTAGAATGAATGACAGACATACTTTTGATAAAGACCGGAAAGGAATTGAAGAGATATGGTTAGAGGTGCTTGACAGGATTCAAGTTAATGGTCTGAAAGAGTTTTTATATCAAAAAAGCAAGCTGGTCTCTGTTAGTTTTGGTGCAGCTCCAACTGTGCAGCTAATGACTCGTTCCCAACTGACCAAGTCTACCACTGAGAAGTTCAGGGGCCATATATTACAAGCGTTTGAATCTGTCCTCGGATCTTCAGTAACGTTAGAAATTAGATGTGAATCAACTAGAGATGAAGGATCTGGGTCTCAACTCCCTCTTAGGCTGCCTGCCACTAAGGATAGTTCTGTTGAAAATAAGATGAGTGAAATTGTAGAAGAAGCAGCTTCTCCGAAGGAGCACAAGAATAACGAGCAGCAGGCTGATGTTAACAAAAAGCCAATTGTGACTTCACACTTAGGAAGAAGAAGGCTACGGGAACAAAGTCAGAGTCGAAGTATTGTAAAAAGTAAGGTATCTCTTGCACATGTAATCCAGCAGGCTGAAGGACATACGCAGAGAAGTGGGTGGTCAAAACGCAAAGCAGTTTCCATTGCTGAAAAGCTTGAACAAGAAAATCTGAGACTGGAGCCAAGATCAAGGAGCTTGCTATGCTGGAAAGCTTCAAGAGGAACCCGTCGGAAGCTTTCACGTTTGAAAGTGAGGACCCGAAAACCTCATGCATTACTGAACCTGGTCTCATGTGGGAAATGTCTTACTACTAAATCTCCAAGATAG 3666 0.4299 MIETVRPASFSDSELSVELKWCFLNPMGWMRNWVSTFVYGVAGGKFGELIDPLEIEDSVVRLVNVLIMTRAVRNRILKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPPSWHSPSIIDVLSKRVENDAMVPEGRRSVVIERQKEGRRLSGTSPPVGSLGPSKVAPGEVSRDNDGGSASRHPYSRSGIGAGRKIGREGSGRKSDRPDYLGLNEEELHNQLGKDLAEEVVSRHSESKERKSKQRGKQVQDVQAKTLSEQLNDVPLDSDDLQSSNNNLRARFPRQEKIIPEPEVSMRAHGKGMNRVKRRRFRSARRARASVESRDAGAENELSVASNSLAHGSTHHKYHMDEADEYADDNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDSRIKKGALDANGRNTSDMPVASDQSSSFTRSDAEALPLLVEASGSQGSTENACWGHDYSGELGIYADNLFKHDFDSDLASEARSGDQHKLRGNRHSRHQSLTQKYLPRTFRDLVGQNLVAQALSNAVMRRKVGFLYVFYGPHGTGKTSCARIFARALNCHSSEHPKPCGFCNSCVAHDMGKSRTIREVGPVSNFDFESIMDLLDNMIVSQLASQYRVFIFDDCDTLSTDCWSAISKVIDRAPRRVVFILVSSTLDGLPHIIISRCQKFFFPKLKDSDIMYTLQRIATKEGLEIDRDALKLIVSRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTREKQRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPTSSDNSFNHSPLALNNADGREAARRTSTSVEIPRKERRLSMDARMENFHAGSSADGMAKGHSSDNKRLAVAGFAPQQTSSHVTNMIRMNDRHTFDKDRKGIEEIWLEVLDRIQVNGLKEFLYQKSKLVSVSFGAAPTVQLMTRSQLTKSTTEKFRGHILQAFESVLGSSVTLEIRCESTRDEGSGSQLPLRLPATKDSSVENKMSEIVEEAASPKEHKNNEQQADVNKKPIVTSHLGRRRLREQSQSRSIVKSKVSLAHVIQQAEGHTQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRGTRRKLSRLKVRTRKPHALLNLVSCGKCLTTKSPR 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1175 1221 SMART AAA_5 556 697 IPR003593 GO:0016887
Dere10g1175 1221 SUPERFAMILY post-AAA+ oligomerization domain-like 768 871 IPR008921 GO:0003677|GO:0006260
Dere10g1175 1221 MobiDBLite consensus disorder prediction 257 278 - -
Dere10g1175 1221 MobiDBLite consensus disorder prediction 257 273 - -
Dere10g1175 1221 FunFam DNA polymerase III subunit gamma/tau 519 696 - -
Dere10g1175 1221 MobiDBLite consensus disorder prediction 432 451 - -
Dere10g1175 1221 Gene3D - 515 694 IPR027417 -
Dere10g1175 1221 CDD HLD_clamp_pol_III_gamma_tau 697 760 IPR045085 -
Dere10g1175 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 744 IPR027417 -
Dere10g1175 1221 MobiDBLite consensus disorder prediction 1082 1104 - -
Dere10g1175 1221 MobiDBLite consensus disorder prediction 163 235 - -
Dere10g1175 1221 Pfam DNA polymerase III, delta subunit 540 697 - -
Dere10g1175 1221 Gene3D - 698 760 - -
Dere10g1175 1221 MobiDBLite consensus disorder prediction 326 340 - -
Dere10g1175 1221 MobiDBLite consensus disorder prediction 324 354 - -
Dere10g1175 1221 MobiDBLite consensus disorder prediction 1058 1126 - -
Dere10g1175 1221 Pfam DNA polymerase III subunits gamma and tau domain III 753 872 IPR022754 GO:0003887
Dere10g1175 1221 Coils Coil 833 860 - -
Dere10g1175 1221 FunFam DNA polymerase III subunit gamma/tau 698 760 - -
Dere10g1175 1221 NCBIfam DNA polymerase III subunit gamma/tau 523 871 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Dere10g1175 1221 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 526 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1175 Dere-ChrDere10 22127121 22134545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1175 523 821 Core DNA Replication Machinery Family AT1G21690 22.667 4.73e-13 70.1