Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1162 ATGGGAGCAGCACCAAGCGAGACCAGTGGCATTAAGGGCAGAAAGAAGTCATCTTCCAGAGGCCACCACAGGTTCGTCGGTGTTCGTCAAAGGCCATCAGGACGATGGGTCGCCGAGATCAAGGACTCTCTTCAGAAGGTCAGGCTATGGCTCGGAACATTCGACACAGCAGAGGATGCAGCACGTGCCTACGACACCGCCGCACGTGCTTTGCGTGGCGCCAATGCACGCACCAACTTTGATTTACCAGACCCCGCAGCCTCCGGTGTCGCCCCCGGCTCCCAGCGCTGCGGCGGTTACAGCTACATGCTGGAAAACATCGAGCCCTTTTCGTTCGAGGACGTGTGTGAGCCGCCCGGAGCGGAAGCCGATCATGGACTTCTTGGTGCACTTAAGGCCAAACTGTTTGATGAGAAGGGAGGAGGGAGGTTTGGCTCTCAATTATCTAGCTTGGTTTTGAGTTCATCCATTGATCAGAAAAATATTCCTCCCAATATGGCTGGAAGTGGAACTGCAATCCCTAACAATTCTGGGTTTGGAAGCACTGCAACGTCATCGAACACTACTACTAGTGGTAAGAGCAATAACAATGATAGCAATACGCTTATATCACATCGTGATCATGGAGGTTCTATGGCAGGAAACGCTAGAGTGGCCATAACCTCATGGTCCAACAGTGAGATAGCTAATTATGAATTACCTTGGCCTACTAGTCTTACACAGATGAACCAGCAGGTTCCTGAAAATAATGGCATGTTTGCCTCTTCAAATAATTCTACATGGCCTCTTTCTGGGGTTATTGATCAGTCTGCTGTGGATATGATGTATTCAGATGTCGATGTGGGAGAGAGACCCTTTAAGATCGCCCGGAGAGAGAGTAATTCAGATAAACTTGGAGGATTTTCTGAAAGTAATAATCTGAATATGATGTTTTCATATGATCATGGGCCTTCAAACAGAAATAAGAACAGCACTAAAGCAAACATGGTGAGTATGCAATTGTCTCAAGTTGGTGGACTAACCGAAGGATTATGGACACCAGAGCAGCAACAATTTGGGCTCTGTGAAAATAATGGTTGGTTTAGTTCCAATAATAATGGTACATGGGATCCTTTGCTCTATAATATGTGTCCTCTGAGCTAG 1143 0.4724 MGAAPSETSGIKGRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRGANARTNFDLPDPAASGVAPGSQRCGGYSYMLENIEPFSFEDVCEPPGAEADHGLLGALKAKLFDEKGGGRFGSQLSSLVLSSSIDQKNIPPNMAGSGTAIPNNSGFGSTATSSNTTTSGKSNNNDSNTLISHRDHGGSMAGNARVAITSWSNSEIANYELPWPTSLTQMNQQVPENNGMFASSNNSTWPLSGVIDQSAVDMMYSDVDVGERPFKIARRESNSDKLGGFSESNNLNMMFSYDHGPSNRNKNSTKANMVSMQLSQVGGLTEGLWTPEQQQFGLCENNGWFSSNNNGTWDPLLYNMCPLS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1162 380 FunFam ethylene-responsive transcription factor RAP2-11 23 82 - -
Dere10g1162 380 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Dere10g1162 380 SUPERFAMILY DNA-binding domain 25 81 IPR016177 GO:0003677
Dere10g1162 380 MobiDBLite consensus disorder prediction 162 211 - -
Dere10g1162 380 MobiDBLite consensus disorder prediction 162 206 - -
Dere10g1162 380 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Dere10g1162 380 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 188 - -
Dere10g1162 380 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Dere10g1162 380 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Dere10g1162 380 MobiDBLite consensus disorder prediction 1 28 - -
Dere10g1162 380 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Dere10g1162 380 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Dere10g1162 380 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1162 Dere-ChrDere10 21902005 21903147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1162 12 80 AP2-EREBP Transcription Factor Family AT5G19790 68.571 1.04e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere10g1162 AP2 6.8e-13 CL0081