Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1149 ATGCCTCCCTGCTTGGGAAATATTTCCTCTTTAAGAGATCTTTACTTGGACTCTAATAAGTTGACTTCAGAGCTACCCTCTTCTTTTTGGAATTTGAAAGATATATTGAGGGTAAACTTATCTTCCAATATTTTAGTTGGAACACTTTCATTAGGGATTGAGAACCTAAAATCTCTTATATTATTAGATTTGTCAAGAAATCAGATTTTCGGTAGTATTCCTACAACTATTGGTGGCTTGCAAAATTTACAAACTCTCTCCTTAGCAGTTAATAAACTACAAGGATCCGTTCCTAAATCACTTGGAAATATGTTGAGCTTAGAATTTCTAGACCTCTCCCGAAACAACTTGTCTGGCGAGATCCCCAAGTCCCTTGAGTCACTTGTTTATCTTAAGTATGCCAATTTCTCTTATAACAAACTACAGGGTGAGATTCCTACTGGTGGGGTTTTTAGAAATTTGACCGCTGAATCTTACATGATGAATGATGCTCTTTGTGGCAAGCCACAATTGCAAGTGCGCCCATGCAAAAAGGAAATAAGGCAAAGGTCAATGACAAAACAGCGTTTATTGAAATACATATTACCTACGGGTTTGTCATTAATTCTTGTTGTTTCATGCATTATCCTTCTACGACATAAACGAAGAAAATCAAGTGATGTTGTCGAAAGATACTTGCCAACTTTAGATGTGCCAAGGAGGATTTCTTATTTTGAAATTGCTAAAGCAACTAATGGATTTGATCAGAGTAACTTACTTGGAAGAGGAAGTTATGGTTCTGTATTTAAAGGAAAGCTTTTGAGTGGAATGATGATTGCAGTTAAAGTATTCAATTTGGATTCAGAATTACTGTCAAGAAGCTTTGAAGTAGAATGTGATGCAATGCGCAATCTACGCCATCGTAATCTGGTCAAGATCATTAGTAGTTGTTCCAATGTTGATTTCAAGTCTTTGATAATGGAGTTCATGCCCAATGGGAGCCTTGAGAAATGGTTATATTCTCACAACTATTGTTTAGATTTTCTACAAAGGTTGAATGTAATGATAGATGTGGCATATGCTTTGGAATATCTTCATTATGGCTTATCAACACCAGTGGTACACTGTGATCTGAAGCCAAGCAACATTTTGTTGGATGATGATATGACTGCTCATGTGAGTGACTTCGGAATTTCCAAACTTTTAGATGAAGGGCAATCTAAGACAGACACGCAAACAATGCCTACCATTGGCTATATAGCACCAGAGTATGGATCTGTTGGAGTTGTTTCAACAAAAATAGACGTGTACAGCTATGGAATTATACTAATAGAAGTGTTCACAAGAAGGAAGCCAACAGAAGATATGTTTGTCTCGGGACTGAGCTTGAAGAGTTGGGTAAGTGAGTCAATGCCCTATGCAAGAATTCAAGTCATTGATTCCAACTTATTACAGGGAGATGAACAACTAATTGGTAATATAATGACATCTGCGTCCTTAATCTTCGAATTGGCCTTGACTTGTTGCAACGATTTTCCTGAAGCACGGAGCAATATGAGAGATGTCATAATGTCATTAAACAAAATCAAGGTCATGTTTATGCGAAGGCAGTAA 1593 0.3697 MPPCLGNISSLRDLYLDSNKLTSELPSSFWNLKDILRVNLSSNILVGTLSLGIENLKSLILLDLSRNQIFGSIPTTIGGLQNLQTLSLAVNKLQGSVPKSLGNMLSLEFLDLSRNNLSGEIPKSLESLVYLKYANFSYNKLQGEIPTGGVFRNLTAESYMMNDALCGKPQLQVRPCKKEIRQRSMTKQRLLKYILPTGLSLILVVSCIILLRHKRRKSSDVVERYLPTLDVPRRISYFEIAKATNGFDQSNLLGRGSYGSVFKGKLLSGMMIAVKVFNLDSELLSRSFEVECDAMRNLRHRNLVKIISSCSNVDFKSLIMEFMPNGSLEKWLYSHNYCLDFLQRLNVMIDVAYALEYLHYGLSTPVVHCDLKPSNILLDDDMTAHVSDFGISKLLDEGQSKTDTQTMPTIGYIAPEYGSVGVVSTKIDVYSYGIILIEVFTRRKPTEDMFVSGLSLKSWVSESMPYARIQVIDSNLLQGDEQLIGNIMTSASLIFELALTCCNDFPEARSNMRDVIMSLNKIKVMFMRRQ 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1149 530 SMART LRR_typ_2 8 31 IPR003591 -
Dere10g1149 530 SMART LRR_typ_2 80 103 IPR003591 -
Dere10g1149 530 SMART LRR_typ_2 104 128 IPR003591 -
Dere10g1149 530 SMART LRR_typ_2 56 79 IPR003591 -
Dere10g1149 530 Pfam Leucine rich repeat 62 117 IPR001611 GO:0005515
Dere10g1149 530 Gene3D Phosphorylase Kinase; domain 1 230 322 - -
Dere10g1149 530 Gene3D Transferase(Phosphotransferase) domain 1 323 528 - -
Dere10g1149 530 Pfam Protein kinase domain 248 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1149 530 SMART serkin_6 247 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1149 530 Gene3D Ribonuclease Inhibitor 1 184 IPR032675 -
Dere10g1149 530 ProSiteProfiles Protein kinase domain profile. 247 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1149 530 SUPERFAMILY Protein kinase-like (PK-like) 228 519 IPR011009 -
Dere10g1149 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 366 378 IPR008271 GO:0004672|GO:0006468
Dere10g1149 530 FunFam Serine-threonine protein kinase plant-type 228 322 - -
Dere10g1149 530 PANTHER OS04G0122200 PROTEIN 1 525 - -
Dere10g1149 530 ProSiteProfiles Leucine-rich repeat profile. 106 129 IPR001611 GO:0005515
Dere10g1149 530 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 50 174 - -
Dere10g1149 530 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 323 530 - -
Dere10g1149 530 SUPERFAMILY L domain-like 7 169 - -
Dere10g1149 530 ProSitePatterns Protein kinases ATP-binding region signature. 253 275 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1149 Dere-ChrDere10 21669603 21671629 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1149 1 528 Receptor kinase-like Gene Family AT3G47570 37.478 8.57e-121 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere10g1149 Pkinase 1.5e-41 CL0016