Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1141 ATGAGACCCTTTTTCAGATTCTTGATTCTTCTGGCTCTCTTCGCCCTTGTTGATTCTTCTTCTTCATCATCATGCAAAAGTAGTCAACAAGACCTGGACCTCGTGTCCAAGGCCTTCAAACCAGTCTCCGGATTCAACTTTTCATGGTTGGACTGTTCTGACGCTCAGATTAGTGCCATAAAGCTTCCATCCAAGAATCTCAGCGGGACTATCTCATGGGGGTTTCTGAGGAACATTTCAAACTTGAAGGTTCTTGATCTCTCTGGGAATTCTCTACAAGGTCACGTGCCTTCCTGGTTCTGGGCAACCTCGAGCTTATTGGAAGTCAATCTTTCCAGGAACAGGTTCGGAGGTCGCATTAATGGCTTCCTTTCTTCTTCCCTTCGAATGCTCAATCTCTCACACAATAGGTTCACCAATCAGGTTCAGCTTTCTGGGTTTTCAAAGCTAAAAGTCCTTGACCTTTCTCATAACAGTTTGAAATCTCTGCCTTCTGGGTTCCAGAGGCTTACCCAACTAAACCACCTTGACCTCTCGAGCTGCAACATCAAAGGAAATGTCAAACCCATCTCTGTTTTAAAGTCTCTCAACTACTTGGACCTATCAAACAACGACTTGAATGGTACTTTCCCCTCTGATTTCCCACGTCTTCATACCCTCCATTTCTTAAACATTTCCCACAACAATTTCAGAGCATTAGATGGCTTCGATGCGTACAAGAAATTCGGCAACTCAGCTTTCCTTCACGCCGGTAACAACTTCAATAGTTACAACGTATCCAAAACGGCGCCGTTTCATCACCCACGGTCTCACTCCCGAAAACAAAACCCCATCCTCAGTAAAAGACCCAAATCAAAATCTAAAACACTGATTCTCTCAGTAACCTCTGCTTCGGGATTCGTCCTTGTTGTATTGTGTATTTGGGTGTTTTGCTTCTTCAGAAAGAAGGTGCGATTGGCTAAAAGAAACAAGTGGGCGATCTCAAAACCGGTCCCACCATTGCCCATCAAGGTCGAGAAATCTGGACCGTTCGCTTTCGAGACCGAATCCGGCACGTCATGGGTCGCTGATCTGAAGGAGCCATCCTCTGCGCCGGTCGTAATGTTCGAGAAGCCGTTGACGAACCTGAGCTTCAAGGACCTCATCGCTGCCACGTCACACTTCGGGAAGGACTCGCAGCTCGCCGAGGGGAGGTGTGGGCCCGTCTACAGAGCCGTCTTACCCGCAGGAGGAGACATCCACGTGGCAATCAAGGTTCTGGAAAACGCTAGAAACGTCGACCATGACGACGCCGTCGAAATGTTCAGTGACCTGTCCAAGCTCAAGCACCCAAATTTACTGCCCCCCTCCGGTTACTGCATTGCAGGTAAGGAGAAGCTGGTTTTGTACGAGTTCATGCCAAACGGCGATTTGGGAAGGTGGCTACATGAGCTGCCAACGGGGGATACAAACGTGGAGGATTGGAGTGGTGACACGTGGGAGATTCAAAACGGCGTAGGATCACAGGCCTCTTCTCCAGAAAAGATGGGTTGGCGAACACGACACCGTATTGCCGTCGGAATAGCACGCGGCCTAGCGTATCTCCACCACGCCGGATCAAAGCCCGTCGTACACGGCCACCTAGTCACTTCCAATATCTTACTCGCCGACGGCTTCGAGCCCCGAATCGCCGATTTCGGGTTCCGAAAAATTGGGCAGCTAAATAGCCCGAATTGCGCCCCCGAGACGGACGTTTACTGCTTTGGAGTCGTGCTTATGGAACTCCTGACGGGGAGGCCCGGAACAGCGGAGACGGTGGTTTGGGTGAGGAAGCTCGTGAGGGAGGGCCAGGGGGTGCGCGCGTTGGATGAAAGGCTGATAATTGACGGCGGCGAGTCGGAGAGGGAGATGGGGGAGAGCCTCCGAGTCGCGTACTTGTGTACGGCCGAGTCACCTGGGAAGAGGCCCACGATGCAGCAGGTCCTGGGTTTGCTCAAAGACATTCATCCTCACGCTGGACTCGGTCCGAGTTAA 2013 0.5102 MRPFFRFLILLALFALVDSSSSSSCKSSQQDLDLVSKAFKPVSGFNFSWLDCSDAQISAIKLPSKNLSGTISWGFLRNISNLKVLDLSGNSLQGHVPSWFWATSSLLEVNLSRNRFGGRINGFLSSSLRMLNLSHNRFTNQVQLSGFSKLKVLDLSHNSLKSLPSGFQRLTQLNHLDLSSCNIKGNVKPISVLKSLNYLDLSNNDLNGTFPSDFPRLHTLHFLNISHNNFRALDGFDAYKKFGNSAFLHAGNNFNSYNVSKTAPFHHPRSHSRKQNPILSKRPKSKSKTLILSVTSASGFVLVVLCIWVFCFFRKKVRLAKRNKWAISKPVPPLPIKVEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLTNLSFKDLIAATSHFGKDSQLAEGRCGPVYRAVLPAGGDIHVAIKVLENARNVDHDDAVEMFSDLSKLKHPNLLPPSGYCIAGKEKLVLYEFMPNGDLGRWLHELPTGDTNVEDWSGDTWEIQNGVGSQASSPEKMGWRTRHRIAVGIARGLAYLHHAGSKPVVHGHLVTSNILLADGFEPRIADFGFRKIGQLNSPNCAPETDVYCFGVVLMELLTGRPGTAETVVWVRKLVREGQGVRALDERLIIDGGESEREMGESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPHAGLGPS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1141 670 ProSiteProfiles Leucine-rich repeat profile. 149 171 IPR001611 GO:0005515
Dere10g1141 670 PRINTS Leucine-rich repeat signature 150 163 - -
Dere10g1141 670 PRINTS Leucine-rich repeat signature 193 206 - -
Dere10g1141 670 SUPERFAMILY L domain-like 47 234 - -
Dere10g1141 670 SMART LRR_typ_2 193 216 IPR003591 -
Dere10g1141 670 SMART LRR_typ_2 79 102 IPR003591 -
Dere10g1141 670 SMART LRR_typ_2 147 169 IPR003591 -
Dere10g1141 670 SMART LRR_typ_2 217 238 IPR003591 -
Dere10g1141 670 ProSiteProfiles Protein kinase domain profile. 388 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1141 670 Gene3D Ribonuclease Inhibitor 18 122 IPR032675 -
Dere10g1141 670 FunFam Calmodulin-binding receptor kinase CaMRLK 126 236 - -
Dere10g1141 670 FunFam Putative LRR receptor-like serine/threonine-protein kinase 349 465 - -
Dere10g1141 670 SUPERFAMILY Protein kinase-like (PK-like) 365 658 IPR011009 -
Dere10g1141 670 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 44 661 - -
Dere10g1141 670 Gene3D Phosphorylase Kinase; domain 1 348 465 - -
Dere10g1141 670 Gene3D Transferase(Phosphotransferase) domain 1 466 567 - -
Dere10g1141 670 Pfam Protein tyrosine and serine/threonine kinase 391 563 IPR001245 GO:0004672|GO:0006468
Dere10g1141 670 Gene3D Transferase(Phosphotransferase) domain 1 568 662 - -
Dere10g1141 670 Pfam Leucine rich repeat 66 116 IPR001611 GO:0005515
Dere10g1141 670 Pfam Leucine rich repeat 127 183 IPR001611 GO:0005515
Dere10g1141 670 Gene3D Ribonuclease Inhibitor 123 293 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1141 Dere-ChrDere10 21509598 21512108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1141 60 661 Receptor kinase-like Gene Family AT5G07280 31.125 7.83e-68 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Dere10g1141 PK_Tyr_Ser-Thr 2.6e-21 CL0016