Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1139 ATGGATTCAGAACGATCGGAGAAGAAAGGAACAATTCTGATGCAGAAATACGAGCTAGGCCGTCTGCTAGGCCAAGGCACATTCGCTAAAGTCTACCACGCCAGGAACGTAAGCACCAACCAGAGCGTGGCCATCAAAATCATCAACAAAGAGAAGATTCTTCGAATCGGCTTAATCGATCAAATTAAGCGCGAGATCTCAGTCATGCGTCTCGTGAGGCATCCCAATATTGTTCAGCTATACGAGGTAATGGCGAGCAAGACGAAGATTTACTTCGCCATGGAGTACGTGAAAGGCGGTGAGCTCTTCGCCAAAGTAGCGAAGGGGAAATTGAAGGAGGATTTGGCGAGAAAGTATTTCCAGCAGTTAATAGGGGCCGTCGATTTCTGCCATAGCCGAGGGGTTTATCATCGCGATCTGAAACCCGAGAATCTGCTTCTGGACGAACATGGGGATCTGAAGATTTCAGATTTTGGGTTGAGCGCTTTGTACGAACCCAGGAAGAACGATGGGCTTCTTTTCACGACGTGTGGGACACCCGCTTATGTGGCCCCTGAAGTGATCAACAAGAAAGGCTATGATGGAGCCAAGGCTGACATATGGTCATGTGGGGTTGTTCTGTATGTTCTTCTTGCAGGGCACCTTCCATTTCAGGATCGAAATCTGATTGAAATGTACAGGAAAATCAGTACTGGCGATTTCAAGTTTCCCAAATGGTTCCCACCTCAGGCTAGAAAGCTTGTTTGGAGAATTCTCGATCCAAACTCAAGGACGAGGGTAAATATAGCTAAGATTATGGAAAACAGCTGGTTCAGAATTGGGTATCACCAGATTGAGGCACCCAAACCTCCACTTCCCCCCACGGTTAGTGATGTTCAGGCTGCTTTTGCTTCTTCGTCATCACCAAGCTTAGAACAAGAAAGCCCTGAAACTCCCACGAACCTGAAACCATCTTGCTTCAATGCGTTTGATATTATATCTCTGTCTTCAGGATTCGATCTTTCTGGTTTGTTTGAGGAAGATAAGGGTCGGAGACAGCAGGCTAGGTTCACCAGTACGAAACCAGCCTCAACGATTGTGTCGAAACTGGAAGAGATAGCACAGGCGGAGAGTAGATTCAAGGTGGTGAAGAAAGATGGTACAGTGAGATTAGAGGGAAGCAAGACAGGTCGAAAAGGCCAACTTGGGATTGATGCAGAGATTTTTGAAGTTACGTCGTCGTTTCATGTTGTGGAGGTGAAGAAAACTGCAGGAGACACCTTCGAGTACATGCAATTTCGAGACCAGAGCTTGAAACCTTCTTTGAAGGATATAGTGTGGACTTGGCAAGGAAGTGAGGAGGAATAG 1347 0.4662 MDSERSEKKGTILMQKYELGRLLGQGTFAKVYHARNVSTNQSVAIKIINKEKILRIGLIDQIKREISVMRLVRHPNIVQLYEVMASKTKIYFAMEYVKGGELFAKVAKGKLKEDLARKYFQQLIGAVDFCHSRGVYHRDLKPENLLLDEHGDLKISDFGLSALYEPRKNDGLLFTTCGTPAYVAPEVINKKGYDGAKADIWSCGVVLYVLLAGHLPFQDRNLIEMYRKISTGDFKFPKWFPPQARKLVWRILDPNSRTRVNIAKIMENSWFRIGYHQIEAPKPPLPPTVSDVQAAFASSSSPSLEQESPETPTNLKPSCFNAFDIISLSSGFDLSGLFEEDKGRRQQARFTSTKPASTIVSKLEEIAQAESRFKVVKKDGTVRLEGSKTGRKGQLGIDAEIFEVTSSFHVVEVKKTAGDTFEYMQFRDQSLKPSLKDIVWTWQGSEEE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1139 448 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1139 448 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1139 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Dere10g1139 448 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Dere10g1139 448 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1139 448 Pfam NAF domain 317 377 IPR004041 GO:0007165
Dere10g1139 448 FunFam Non-specific serine/threonine protein kinase 11 312 - -
Dere10g1139 448 CDD STKc_SnRK3 16 270 - -
Dere10g1139 448 FunFam Non-specific serine/threonine protein kinase 315 440 - -
Dere10g1139 448 SUPERFAMILY Protein kinase-like (PK-like) 13 322 IPR011009 -
Dere10g1139 448 CDD CIPK_C 321 436 - -
Dere10g1139 448 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Dere10g1139 448 Gene3D Transferase(Phosphotransferase) domain 1 7 315 - -
Dere10g1139 448 Gene3D Kinase associated domain 1, KA1 316 441 - -
Dere10g1139 448 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 433 - -
Dere10g1139 448 FunFam Non-specific serine/threonine protein kinase 8 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1139 Dere-ChrDere10 21458927 21460273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1139 7 444 CBL-interacting serine-threonine protein kinases AT5G45820 67.494 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Dere10g1139 Pkinase 2.7e-74 CL0016