LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere10g1137	ATGGGGTTTCGATGGAACCAATTTGGATTATGGTTCAAAATCTATATTGGTTTGATTTCTTTATGGGAAATTCGAGTGTGTTGGTCGCTTAATAACGAAGGATTAGCCTTGTTGGAGTTCCGGGACAGAATAACTTTTGATCCTTATGGTGCTTTGGCAAATTGGAATCCGGATGATTGTGACCCTTGCGATTGGTTGGGTGTTCATTGTGTCGACAGTAAAGTGCAAGTGCTCGACTTAAACACATTATCTTTGGAAGGCACATTGGCCCCAGAGCTTGGGAAACTCAGTCACTTAAAATCTCTTGTGTTATGCAAGAATAATTTTTCTGGTCCGGTTCCCAAGGAACTTGGAAGTCTAGCCAAGCTGGAGTTATTGGATTTAAGGGATAATAACTTGACAGGAAGTATACCAGTGGGGATTAGCAGGATATCAGTACTAAAACACTTGTTACTTTGCGGCAATAAAATTGAAGATAGTGTCTGTCAAGATGTTGGAAAATCGCCCTTCAAATGGCTATTTGTTGATGATTGTACACCACCTCTGACATCTGTTTCTGGTGGCATGAATAGGAAGTTTGGAAACTGTATGTGGCAGAGAAATTTTGTACCATGGAACAAGGCAGATTTTATAGTTATTCAGATTAAAGGAGCACTCGTGAAATACCTTAATGCCTTAGTGCTACCACTGTTCAAGCTTGGTAAGGCTCTTTATGGCTGTGAAGAAAATTTCTATGACAATCAGCATAGTTCTCATGAACCTGTGATTACCCAGAATGTACCGAACATCATCAGTTCTACACGTCGTAGGTTACTTGATCAGTCCAGTAACCTCGCAGCTGCACCTGTTAGTGCTGGGCCTACCAAACCAATTGTTTCTCTTCCAACAACTCTGAGCAGTGGAGCTTTCCCAGCTGTGCCAGCTGCCAAGAAACAAAATCAATCATCTCCACCGCCTTCAGTTGCTGGTTTTTCACCTGATACTTCAAATCAAGGCCAGTCTTCCCAATCTTCTGCTGGAAAACAAACAGCTCAAGAACATTCAACTGAAGATGCTTCAAGAAATTTGTGGACATATATAATTATTATCATTTCATTTGTGGCTGCACTGGTCATTATTGCTGTGGTCATATTTTGTTTGTGGAGAACTCGAGCAGCAAAAGCAATAAGCCCCTGGAAGACAGGAATAAGTGGACAATTGCAGAAAGCATTTGTAACAGGGGTCCCCAAGTTGAATCGTCCAGAGCTGGAGACTGCCTGTGAGGATTTCAGCAATATCATTGATAATTTTGATGATTGCACCATATACAAAGGAACACTATCCAATGGAGTTGAGATTGCTGTTGTTTCAACTATGATCTCTTCTTCAAAAGAATGGTCAAAGAACTTGGAGATGGGCTATCGGAAAAAGATTAATTTGTTGTCCCGTGTAAATCATAAAAACATCATCAATCTGATTGGCTTCTGTGAGGAAGAAGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCAAATGGAACCTTGTTTTCGCATCTCCATGTCAAGGATGATGAGCATCTTGATTGGAGCGCAAGGACAAGGATTATTATGGGCGTTGCTTATTGTTTGCAATACATGCACCATGATCTGAACCCACCAATAGCTCTTAGCGGCCTTGCTTCATCTTCCATCTACTTAACTGATGATTTTGCTGCCAAGGTTGGCGAGAAAACTTTTAGCAAGCCTGCGTCACCAGAATCCAGTTCAACCGAAGAAATTGGATCAAACCATTCTGAATTGCCACCCAATGCTGATCCTGAAACAAATGTCTATGACTTTGGAATATTGTTACTTGAAATAATTTCTGGGAAACTCCCTTACTCTGAAGAATATGGCCATCTCGCGCAGCTGGCTGCTGAATGCGTGAATGAAAAGAGAAGCATGAGCTATATGATTGATCCAACTCTGCAGTCATATAACAACGATGAACTTGATGTTATCTGTGAGGTTATCCAAGACTGCATCCACTCTGATCCAAGGTTAAGACCCACAATGAAGGACATAATTTCCAAATTGAAGGAAGTCATTAATATATCACCAGAACAAGCAGTCCCGAGACTTTCCCCACTCTGGTGGGCTGAACTGGAAATCTTGTCACTGGAGGCTAATTAA	2154	0.4132	MGFRWNQFGLWFKIYIGLISLWEIRVCWSLNNEGLALLEFRDRITFDPYGALANWNPDDCDPCDWLGVHCVDSKVQVLDLNTLSLEGTLAPELGKLSHLKSLVLCKNNFSGPVPKELGSLAKLELLDLRDNNLTGSIPVGISRISVLKHLLLCGNKIEDSVCQDVGKSPFKWLFVDDCTPPLTSVSGGMNRKFGNCMWQRNFVPWNKADFIVIQIKGALVKYLNALVLPLFKLGKALYGCEENFYDNQHSSHEPVITQNVPNIISSTRRRLLDQSSNLAAAPVSAGPTKPIVSLPTTLSSGAFPAVPAAKKQNQSSPPPSVAGFSPDTSNQGQSSQSSAGKQTAQEHSTEDASRNLWTYIIIIISFVAALVIIAVVIFCLWRTRAAKAISPWKTGISGQLQKAFVTGVPKLNRPELETACEDFSNIIDNFDDCTIYKGTLSNGVEIAVVSTMISSSKEWSKNLEMGYRKKINLLSRVNHKNIINLIGFCEEEEPFTRMMVFEYAPNGTLFSHLHVKDDEHLDWSARTRIIMGVAYCLQYMHHDLNPPIALSGLASSSIYLTDDFAAKVGEKTFSKPASPESSSTEEIGSNHSELPPNADPETNVYDFGILLLEIISGKLPYSEEYGHLAQLAAECVNEKRSMSYMIDPTLQSYNNDELDVICEVIQDCIHSDPRLRPTMKDIISKLKEVINISPEQAVPRLSPLWWAELEILSLEAN	717

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere10g1137	717	Pfam	Leucine rich repeat N-terminal domain	31	70	IPR013210	-
	Dere10g1137	717	Gene3D	Ribonuclease Inhibitor	29	200	IPR032675	-
	Dere10g1137	717	MobiDBLite	consensus disorder prediction	573	600	-	-
	Dere10g1137	717	Pfam	Protein tyrosine and serine/threonine kinase	435	686	IPR001245	GO:0004672\|GO:0006468
	Dere10g1137	717	FunFam	Inactive receptor-like serine/threonine-protein kinase	395	503	-	-
	Dere10g1137	717	ProSiteProfiles	Protein kinase domain profile.	386	690	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g1137	717	MobiDBLite	consensus disorder prediction	307	347	-	-
	Dere10g1137	717	FunFam	Leucine-rich repeat receptor-like kinase	33	150	-	-
	Dere10g1137	717	Gene3D	Transferase(Phosphotransferase) domain 1	504	698	-	-
	Dere10g1137	717	Gene3D	Phosphorylase Kinase; domain 1	393	503	-	-
	Dere10g1137	717	PANTHER	PROTEIN MALE DISCOVERER 2	26	714	-	-
	Dere10g1137	717	MobiDBLite	consensus disorder prediction	575	597	-	-
	Dere10g1137	717	SUPERFAMILY	L domain-like	28	168	-	-
	Dere10g1137	717	MobiDBLite	consensus disorder prediction	309	347	-	-
	Dere10g1137	717	Pfam	Leucine rich repeat	97	157	IPR001611	GO:0005515
	Dere10g1137	717	SUPERFAMILY	Protein kinase-like (PK-like)	422	686	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere10g1137	Dere-ChrDere10	21433969	21440080	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere10g1137	85	689	Receptor kinase-like Gene Family	AT5G56040	25.116	1.55e-37	149

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VI-2	Dere10g1137		PK_Tyr_Ser-Thr	4.8e-19	CL0016