Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1135 ATGGCGATTCAAGGACCAGCACCATCGTCCTTTGGCTTCACCAGCGAATCCAAGTATAGCTATGACGTTTTTCTGAGTTTCAGAGGCGAAGATACTCGCCACTCCTTCACTAGCGCTCTCTACTATGCTTTGCGCAAAAGGGGAATCAATACCTTCATTGACGATAAGAAGCTGGGGAAAGGGAAACGGATCTCACCTGCTCTTCTTAGAGCCATCGAGAAATCGAGGATTTCGATTATTGTGTTCTCTACGAACTACGCTACTTCTTCATGGTGCCTCGACGAACTCGACCACATCGTTTGGTGTAAGAAGGAGAAGAAGCAGATAGTTATGCCCATTTTTTACAAGGTGGATCCTACGGATGTACAGTATCAGAGAAATAGCTTCGGAGAAGCCATGGCTGCTCATGAATATAGGTTCAGAAATGACATGGAGAGAGTGCGCAAATGGAGGTCTGCTTTGTCTGAAGCCGCCGGTTTGTCATCGGAACGGATTTATGAAGATGGATACGAATTTGGGTTTATTGAAAGGATTGTTGAAGATGCATATGCTAAGCTACCTCCTAAACGCTTACATAGCACTGATCACATGGTTGGACTTGAGTCTCGCATAGAAGAAGTGAAGTCACTTCTGGATCAATCTGATAAAGGTGTTTGTATCTTGGTGATTCATGGCATTGGTGGGATTGGCAAAACAACCCTTGCCATGGCTCTGTATAATTCAATCTTCTGCCAGTTTGAAGGTGCAAGTTTTCTGTTTGATGTCAGAGGAGCTTCAGAGCAATATAGGGGCATAGTTCGTCTCCAACAGACACTTCTATCAGAGATCCTTGAGGAGAAGAGGATGAAGTGGGGTAGTGTTGATGAAGGAATATCTAAAATAAAACATAGACTCTCTAGCAAAAGAGTTCTGTTGGTTCTTGATGATGTTGATGATATTGAACAGTTAGAACAACTCGCAGGAGGGTGTGATTGGTTTGGTTCTGGTAGTAAGATCATTATAACGACAAGAAACAAGCAATTGCTAACTGCACATCATGTTGAGAAAACATATGAAATGAAAACGCTAGATGACCATGAATCTCTTGAACTCTTTTGTTGGCATGCCTTCCATATGAGCCAACCTCCAAAAGGCTATGAAGATATGTCTGATCGCGTAATAAGTTATGCACAGGGCCTTCCCCTTGCTTTAAGAGTAATAGGCTCCAATTTGGCTCATAAAAGCATAGAGGAATGGGTATCTATATGGGAACAATATGAGAGGATCCCAGAAAGAACAATTCATGAGGTACTGAGGATAAGCTATGATTGCTTACAGGACAATGCTAAGTGTATTTTCCTAGATATTGCTTGTTTCTTCAACAAGTGGACATCAATACGTGTTGCAGAATTGCCATACGCTTATGATTTTGGGGCAAGGTTTTTTATTGAAGTGCTTGTTGAGAAATCTCTTGTAAGTTTTGATGGTAATGGCTTCTTCCGAATGCACGATCTCATACAAGAAATGGGTCGAGAGGTTGTTAGGCTAGAGGCACCATCAAATCCTATGGGACGCAGCAGGTTATGGTATTACAAAGATGTTCTCAGAGTATTACGTGAAAATTCAGGAAGTAGTAACATTGAAGGAATAATGCTTAATCCACCTCAACAAGAAGAAGTAGAGTGGAGTGGCCTTGCCTTTGAGAAGATGGATAATCTCAGGATTCTCATTGTTCGAAATGCCCATTTTTCAACAGGTCCTAAATGTATGCCTAATAATTTAAAATTCCTTGACTGGGAGGGATACCCTTGTATGACTCTACCACCAGATTTTTATCCCAAGAAAATAGTTGTCTTCAGATTATGTGGGAGTCGTTTCAGATTGCGAGAGCCATTCAAGAGGTTTGAATACATGACAAACATGCGTTTCTCAAATTGTGAATTCGTAACTGAAGTACCTGATTTGTCTGAAGTCCCAAATTTAAGAGAGTTGATATTCAATGAGTGTCCCAATCTGATCAAGGTTGATGGCTCCGTGGGATCTCTCTCTAAGTTGATTACATTAGATGTTAGTGGCTGCACTGAACTTAGAAACTTTCCACGCGAAATCAACATGGCATCTCTTATACACCTTAACGTCCAAAATTGCAAAAGTCTCAGCTTCTTTCCAAATATAATGGGGAAGATGGATGCATTAACGACCATTATTGCAGATGACACTGCTATTGAGGAGCTCCCACATTCAATAGGAAATCTTTCAGGGCTTCAATATCTGAATATGAATACCTGCAAAAGTCTTATGGAGCTTCCAAGTAGCTTATTCACGTTGCCAAACCTTCACTCGCTTAGTTTGGGAGACAGTCCACCTCGTAACAGAAAATTAGTACAAGAGAGCCAACAAGAAGTCATTGGCTGCACAAATCTGACGCTCTTGGATCTTAAAAATTCTTCTCTATTGGATGAAGATGTTCACCTAGCTCTGAATTATTTTCGGAATTTGGTATGTTTAAATTTATCTGGGAATGATTTTGTGTCCCTTCCTGAGTGCATTAAAGAGTGTGCCAATCTGTTGGAACTGGATGTGAATAATTGCAAGAGGCTGAGAAACATACCAGAGCTTCCATCGAAGTTGAAGGTCATGAAAGCTGAGGATTGCACATCGTTAACTCCAGAGTCATTGGGCCGTTTATGGTCTCAGGCAAGGAAGGTAGTCAATGGCTTGTCAGTCAATATGCCAGAAACAGCATTTCCAGATTGGCTGGACCATTGCTGCAAAGGAGGGACCTTGTGTTTTCGTGCTCGTGGGAATTTCCCTCTTGTTGCCTTAGCATTTCAGTTGGGGAAAGCGAATGCGAGTGTGAGATCTATTCATGGTCATACTGTGCCCTTGAAGAGCATCACTGGTCATATAAGCATCAATGGTCGTAAAGTAAAAGGGAAAGGACACACACACTCTTTTGTGTACTCAGTGAAAGAAGGTAATGTGAGCTTATGGGACCCAAGACGGGCATTTTGGCATTGGGACGGACTAGATGGGTTTCTGACAACGGAATGGAATGATGTAAAGATAAAAGTTAGATGTCGCTCACCAGATTTGTCTGTGGTTAAGTTTGGAGTTTATGTCTGCAAGCAGCAAACAAACATGGAGAATGTACGGTTCATGTATTCTCTGCTTTCCAGGAATGCTCCAACAAGTTTGCTCAAACGAAGACCTATAGCTTCTCTTCCTTATGAACCAAACAAGAAATTATTCATGAGCAAGTTCAAGGCTACTGATCAAGGAAAAAATCATAACACAAAGACAAGGTGA 3288 0.4148 MAIQGPAPSSFGFTSESKYSYDVFLSFRGEDTRHSFTSALYYALRKRGINTFIDDKKLGKGKRISPALLRAIEKSRISIIVFSTNYATSSWCLDELDHIVWCKKEKKQIVMPIFYKVDPTDVQYQRNSFGEAMAAHEYRFRNDMERVRKWRSALSEAAGLSSERIYEDGYEFGFIERIVEDAYAKLPPKRLHSTDHMVGLESRIEEVKSLLDQSDKGVCILVIHGIGGIGKTTLAMALYNSIFCQFEGASFLFDVRGASEQYRGIVRLQQTLLSEILEEKRMKWGSVDEGISKIKHRLSSKRVLLVLDDVDDIEQLEQLAGGCDWFGSGSKIIITTRNKQLLTAHHVEKTYEMKTLDDHESLELFCWHAFHMSQPPKGYEDMSDRVISYAQGLPLALRVIGSNLAHKSIEEWVSIWEQYERIPERTIHEVLRISYDCLQDNAKCIFLDIACFFNKWTSIRVAELPYAYDFGARFFIEVLVEKSLVSFDGNGFFRMHDLIQEMGREVVRLEAPSNPMGRSRLWYYKDVLRVLRENSGSSNIEGIMLNPPQQEEVEWSGLAFEKMDNLRILIVRNAHFSTGPKCMPNNLKFLDWEGYPCMTLPPDFYPKKIVVFRLCGSRFRLREPFKRFEYMTNMRFSNCEFVTEVPDLSEVPNLRELIFNECPNLIKVDGSVGSLSKLITLDVSGCTELRNFPREINMASLIHLNVQNCKSLSFFPNIMGKMDALTTIIADDTAIEELPHSIGNLSGLQYLNMNTCKSLMELPSSLFTLPNLHSLSLGDSPPRNRKLVQESQQEVIGCTNLTLLDLKNSSLLDEDVHLALNYFRNLVCLNLSGNDFVSLPECIKECANLLELDVNNCKRLRNIPELPSKLKVMKAEDCTSLTPESLGRLWSQARKVVNGLSVNMPETAFPDWLDHCCKGGTLCFRARGNFPLVALAFQLGKANASVRSIHGHTVPLKSITGHISINGRKVKGKGHTHSFVYSVKEGNVSLWDPRRAFWHWDGLDGFLTTEWNDVKIKVRCRSPDLSVVKFGVYVCKQQTNMENVRFMYSLLSRNAPTSLLKRRPIASLPYEPNKKLFMSKFKATDQGKNHNTKTR 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1135 1095 Pfam TIR domain 21 187 IPR000157 GO:0007165
Dere10g1135 1095 Gene3D - 190 353 IPR027417 -
Dere10g1135 1095 Gene3D - 355 439 IPR042197 -
Dere10g1135 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 449 IPR027417 -
Dere10g1135 1095 Gene3D - 15 189 IPR035897 -
Dere10g1135 1095 Gene3D Ribonuclease Inhibitor 712 900 IPR032675 -
Dere10g1135 1095 SMART till_3 20 160 IPR000157 GO:0007165
Dere10g1135 1095 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Dere10g1135 1095 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Dere10g1135 1095 SUPERFAMILY L domain-like 544 887 - -
Dere10g1135 1095 Gene3D Ribonuclease Inhibitor 536 710 IPR032675 -
Dere10g1135 1095 SUPERFAMILY "Winged helix" DNA-binding domain 426 531 IPR036390 -
Dere10g1135 1095 PRINTS Disease resistance protein signature 673 689 - -
Dere10g1135 1095 PRINTS Disease resistance protein signature 297 311 - -
Dere10g1135 1095 PRINTS Disease resistance protein signature 390 404 - -
Dere10g1135 1095 PRINTS Disease resistance protein signature 220 235 - -
Dere10g1135 1095 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 160 IPR035897 -
Dere10g1135 1095 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 770 IPR044974 GO:0006952
Dere10g1135 1095 Pfam NB-ARC domain 201 421 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1135 Dere-ChrDere10 21418583 21424339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1135 17 777 WRKY Transcription Factor Family AT4G12020 30.858 5.08e-88 310