Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1134 ATGTCAGAAGAAGAACACGAGATTTATAATGACAGTGAGAAGTGTGAGGAAACTTCACTGGGGTCTTCCCAGAAGTGTTCATCGTTTGACTTGAATGAAGAAGCAAGTAGTGAAGAAGAAGAACAAGAACAAGAGAAGGATCACACAGAAGAAGAAGAGAAAAACGAGAAAGTGAAGGATCATGAGGGTGATTCATCATCAAATAGAAGCACATCAAAAGAAGGAAATGAAAGAAGAGGCACAGTGAGACAATATGTGAGATCCAAGATGCCTCGGCTTCGGTGGACTCCAGATCTTCATCTCTCCTTCGTGCATGCAGTAAAAAGGCTTGGCGGTCAAGAGAGAGCAACGCCCAAGTTGGTGCTTCAGCTAATGAATGTGAGAGGACTAAGCATTGCTCATGTGAAGAGTCATTTGCAGATGTATCGGAGCAAGAAACTTGATGAGGCTGGACAAGTGCTAAGTCACAGATCCTCCCACATTAGTCGTATTTCGCAACTATCCTATCAATCTATGAACACAAGCCAACAGTTCAAGATGGGAAATGGAGGAATTATTCTAGCAAGCAATTGCAACGAGCATGGTGGTTTTCAAGGCCTCTTCAAGCCCTCTTTTTCCCTTTCACACTCACATACAATAGCTACAGGTTCCAGGCACCAACAATGGCACTTCAATAATCAGCTCTTCAGAAGGCAAAGTTCCATAATAGCAAGCAATGAAGTGATGATGCCCTCATCAACAACATCAAGCCAAATTCTACTGAATGATACAACAAGTCGAATCGCACCCATGAGACCAAGCCAATTTCTGGAAGAGAAGAAGTGGCCTCCATTAGAAATTATAAGCAGTAGTCACCAATGGAAGCTCAAGAAGTTACCTACCAGTGACCTTACTTGGCCCAACAATAATAACAATAGTTGTGATTCACAATCTGCACTTCACCAACTTGGCACTATGCCTCCTGCATCTGCTGGGCCGGCTGATCAATCGAGGCTTGGGATCAACACAAGCAACAACGGATCCAATAGTTTGAAGCTTGAATTTATGCTCCCATTTCGGATCAAGTTAAATGAAGCGAAGCCGAAGAATGAAGAGCAATGGTTGCCTGATTTGCAACTGGGACTGAATTATCACAGAGATAGCTACGATGACGGTGCCGTCAATCAGGCTCAGGCTGATGATCACTGCAAGGAAACCCAAGAAATTAGCACGAAGCTTTCCCTTTCTTAG 1230 0.4358 MSEEEHEIYNDSEKCEETSLGSSQKCSSFDLNEEASSEEEEQEQEKDHTEEEEKNEKVKDHEGDSSSNRSTSKEGNERRGTVRQYVRSKMPRLRWTPDLHLSFVHAVKRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSHRSSHISRISQLSYQSMNTSQQFKMGNGGIILASNCNEHGGFQGLFKPSFSLSHSHTIATGSRHQQWHFNNQLFRRQSSIIASNEVMMPSSTTSSQILLNDTTSRIAPMRPSQFLEEKKWPPLEIISSSHQWKLKKLPTSDLTWPNNNNNSCDSQSALHQLGTMPPASAGPADQSRLGINTSNNGSNSLKLEFMLPFRIKLNEAKPKNEEQWLPDLQLGLNYHRDSYDDGAVNQAQADDHCKETQEISTKLSLS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1134 409 MobiDBLite consensus disorder prediction 300 317 - -
Dere10g1134 409 SUPERFAMILY Homeodomain-like 89 145 IPR009057 -
Dere10g1134 409 Gene3D - 90 147 - -
Dere10g1134 409 Coils Coil 32 61 - -
Dere10g1134 409 MobiDBLite consensus disorder prediction 33 47 - -
Dere10g1134 409 FunFam Myb family transcription factor 89 147 - -
Dere10g1134 409 NCBIfam myb-like DNA-binding domain, SHAQKYF class 91 146 IPR006447 GO:0003677
Dere10g1134 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 147 IPR017930 -
Dere10g1134 409 MobiDBLite consensus disorder prediction 385 409 - -
Dere10g1134 409 MobiDBLite consensus disorder prediction 1 85 - -
Dere10g1134 409 MobiDBLite consensus disorder prediction 300 338 - -
Dere10g1134 409 MobiDBLite consensus disorder prediction 15 31 - -
Dere10g1134 409 Pfam Myb-like DNA-binding domain 93 143 IPR001005 -
Dere10g1134 409 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 70 179 IPR046955 GO:0003700
Dere10g1134 409 MobiDBLite consensus disorder prediction 48 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1134 Dere-ChrDere10 21401812 21406091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1134 82 161 G2-like Transcription Factor Family AT2G42660 69.412 2.52e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere10g1134 Myb_DNA-binding 8.2e-07 CL0123