Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1115 ATGGCGGATTTACAGAATTCTCTCACGCCGCCGGCCACAAGCCAACGTCCGATGCCGGTCCGGGAAGATTGTTGGAGCGAAGAAGCTACCTCCACGCTTGTCGACGCCTGGGGCCGCCGTTTCCTGGAGCTGAACAAAGGGAACCTCCGGCAGAAGGACTGGCAGGACGTGGCAGATGCCGTCAACGCTCTCCATGGCCATACGAAGAAAACGCACCGTACAGATGTCCAGTGCAAGAACCGCATCGATACTATTAAGAAGAAATATAAGGTTGAGAAGTCTAGGGTTATGAACTCGAACGGGGCTGTTACTTCCTCTTGGCCGTTTTATGACCGGTTAGATGCTTTGATTGGGTCCAGTTTTAATTCGAAGAAGTCGTCGCCGTCGCCTCCGGTGGCTCTCCCGTTGCCCTATCGTAAAATACACTCCCCACCGGTGACTGCGGTGCCAGCATCTGTGGCACTGCCACAGAAGCGGTCTGCAGTGACGGGTTTAGATGATGGGTATTTTAGGAGGAATTATTCAGCTATGGCAGCTGCAGCAGCTGCAGCCGAGGCTGATGAGGATGAGGACGAAGTGGCGGAGGAGGATGAGGAGGATGAAGAGAGGGGAAGTGAGGTTGAGGAGGGTGAGAAGGAAAGGGAAGGGATGAGGAGGTTGGCAAAGGCCATAGAGAGGTTTGGGGAAATGTATGAGAGGGTGGAGAGAGAAAAGTTGAGGCAGATGGTGGATTTGGAGAAACAGAGGATGCAGTTTGCTAAAGATCTAGAAGTACAGAGGATGCAGATGTTTATGGACACACAGGTTCAGCTGGAGAGGATTAAGCGTGGCAAGAGATCGGGGTCTAATGGTGAGCTACAATTTTATGGCTGCTCAGATAAAGCTGAAATGTTTGGGAAACGGTTCTGTCTGCCCATACGTGTGGTGTATTGGAAGTCCCTTGCATTTGGGCCTTCTTATTCTTGCACTGAATGTCAGCTTCCATTGGCTATTGATACATTTTATCTTCTGCTTACACCATCCTCCTTCGAGCTCTTAGGTTTCTTAAAGCAAGACAGTGTTCATCGATTGGATTCATGCATCTGGAAACTTGAGTCCCACCAGTTAGAAAGAGTCTTGGAGATGTTTATCCAATTCTTTATTCGTTCTATGGAGATATGTATAGCTAGCCAAGAGGGTGATGGATTAATGTTCCCTTCATCTGTTCTTCCATTGTTCTACATCTGTGTATTGGAGAAAATGTTGCCTGATAATGTGCACCTTTTTCCAATGTACATCGGTTATACAGCAAGGCCTGATGCTGGAATTGTGGAAATAGTGTAG 1323 0.486 MADLQNSLTPPATSQRPMPVREDCWSEEATSTLVDAWGRRFLELNKGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKSRVMNSNGAVTSSWPFYDRLDALIGSSFNSKKSSPSPPVALPLPYRKIHSPPVTAVPASVALPQKRSAVTGLDDGYFRRNYSAMAAAAAAAEADEDEDEVAEEDEEDEERGSEVEEGEKEREGMRRLAKAIERFGEMYERVEREKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKRSGSNGELQFYGCSDKAEMFGKRFCLPIRVVYWKSLAFGPSYSCTECQLPLAIDTFYLLLTPSSFELLGFLKQDSVHRLDSCIWKLESHQLERVLEMFIQFFIRSMEICIASQEGDGLMFPSSVLPLFYICVLEKMLPDNVHLFPMYIGYTARPDAGIVEIV 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1115 440 MobiDBLite consensus disorder prediction 1 21 - -
Dere10g1115 440 Pfam Myb/SANT-like DNA-binding domain 22 116 IPR044822 -
Dere10g1115 440 FunFam trihelix transcription factor ASIL2 25 91 - -
Dere10g1115 440 Coils Coil 217 256 - -
Dere10g1115 440 MobiDBLite consensus disorder prediction 184 206 - -
Dere10g1115 440 MobiDBLite consensus disorder prediction 181 216 - -
Dere10g1115 440 Coils Coil 179 199 - -
Dere10g1115 440 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 12 278 IPR044823 -
Dere10g1115 440 Gene3D - 25 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1115 Dere-ChrDere10 20909442 20914511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1115 169 282 Trihelix Transcription Factor Family AT3G14180 37.903 5.01e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere10g1115 Myb_DNA-bind_4 1.4e-24 CL0123