Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1097 ATGAAACAGCACTTGGATGTCAGGCATGGCCGAGAAGCCATTTTGTTCAGAAATGGAATTCCTTTCTTATTCTTCTGCTTCTTAACTATGTTTGCAGAACCAGGTTCCTCTGACCCATGCATAGAATCAAAGTGCAATGTCCACGAACCAGATATTCGATTCCCGTTTAGGCTTAAAGGAAAACAACCAGAACGGTGTGGCTATAATTCTGGATTTGATCTCTACTGCGATGAAACAAACCGGACAGTCCTCGAGCTGCCTTTTTCTGTCAAGTTTTCTGTCTATAACATCGACTATGAATCACAAGTCTTAACTGTGCATTACCTTCAAGGATGCCTTGCTCATCTCAATTTATCTGCATCTCATTTTTCGTTCCATGATAACCATGAATCAGATGGATATGCATTATTCAATTGTTCGGGGACCTCTCGTAGAAACAGTACATACTTTTCAATACGGGAGAACTTTTCTTGCCTCGATGTGTCTGGCTATGAAGTTATAGCCATGTCATCTAGAGATAGAATCATGGACAATCCCCTTTTATCTTGCACTAGAATTCATAGCTATGAATCGGTGCCCAATTCTCTTTACAATAACATCAACTTTCTAAGTCTACTTTGGGTCCAACCAGATTGCAGAAAGTGCGATGGCGGGCAATGTAAATGGAAAGAAAACAAATTTCAACGCGAACCAGAATGTATCCCCAGCCCTCCTAAAGGTTCATCAAAAAGGAAAGCACTTGCAGGTGAACTCCTAGGCCCATTTCTGCCTATATTAGTCGGGGTTGTTGTCTACTGTTTCTATTTAGCTGGCCATGAGAGGCAGAGTTACAAAAGGATCAAACAGTTTTTGGAGGACTACAAAGCACTTAGGCCAGCCAGATACACGTATGCAGACATAAAGAGAATCACAAATCAGTTCAAGGATGAACTTGGACAAGGAGCTTTTGGAACTGTCTTTAAAGGGAAGCTATCCAATGAAATTCAGGTTGCTGTTAAGCTTCTAAACACTTCAACGGGAAATGGGCAAGAGTTCATCAATGAAATGGAAACAATGTGTCAAATTCACCATGTCAATGTGGCTCGCTTGGTTGGCTTCTGTGCAGATGGAGGCAAACGAGCTTTGGTTTACGAATTTTTACCAAATGGAGATGGAGAAAAGTTAATTATGCCTCCTAATCCATTTGGCTCTACACCTCCAACTAGAAAAAGGGTTATTGGACCAAAGCGTCTGACCCCAGAGTTATCAGTCATATCTGAAACAGAGTGA 1269 0.4137 MKQHLDVRHGREAILFRNGIPFLFFCFLTMFAEPGSSDPCIESKCNVHEPDIRFPFRLKGKQPERCGYNSGFDLYCDETNRTVLELPFSVKFSVYNIDYESQVLTVHYLQGCLAHLNLSASHFSFHDNHESDGYALFNCSGTSRRNSTYFSIRENFSCLDVSGYEVIAMSSRDRIMDNPLLSCTRIHSYESVPNSLYNNINFLSLLWVQPDCRKCDGGQCKWKENKFQREPECIPSPPKGSSKRKALAGELLGPFLPILVGVVVYCFYLAGHERQSYKRIKQFLEDYKALRPARYTYADIKRITNQFKDELGQGAFGTVFKGKLSNEIQVAVKLLNTSTGNGQEFINEMETMCQIHHVNVARLVGFCADGGKRALVYEFLPNGDGEKLIMPPNPFGSTPPTRKRVIGPKRLTPELSVISETE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1097 422 Pfam Protein tyrosine and serine/threonine kinase 307 384 IPR001245 GO:0004672|GO:0006468
Dere10g1097 422 Pfam Wall-associated receptor kinase galacturonan-binding 40 106 IPR025287 GO:0030247
Dere10g1097 422 SUPERFAMILY Protein kinase-like (PK-like) 288 394 IPR011009 -
Dere10g1097 422 Gene3D Phosphorylase Kinase; domain 1 270 379 - -
Dere10g1097 422 MobiDBLite consensus disorder prediction 391 410 - -
Dere10g1097 422 FunFam serine/threonine-protein kinase PBS1-like 273 379 - -
Dere10g1097 422 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Dere10g1097 422 SMART tyrkin_6 305 422 IPR020635 GO:0004713|GO:0006468
Dere10g1097 422 ProSiteProfiles Protein kinase domain profile. 305 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1097 422 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 22 278 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1097 Dere-ChrDere10 20349236 20351271 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1097 54 389 Receptor kinase-like Gene Family AT1G66910 30.130 9.06e-31 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Dere10g1097 PK_Tyr_Ser-Thr 9.8e-17 CL0016