Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1087 ATGAAACAGCACTTGGATGTCAGGCATGGCCGAGAGGCCATTTTGTTCAGAAATGGAATTCCTTTCTTACTCTTCTGCTTCTTAACTATGTTTGCAGAACCAGGTTCCTCTGACCCATGCATAGAATCAAGGTGCAATGTCTACGAACCAGATATTCGATTTCCGTTTAGGCTTAAAGGAAAACAACCAGAATGGTGTGGCTATAATTCTGGATTTGATCTATACTGTGATGAAACAAACCGGACAGTCCTCGAGCTGCCTTTTTCTGTCAAGTTTTCTGTCGATAACATCGACTATGAATCACAAGTCTTAACTGTGTCTTACCTTCAAGGATGCCTTGCTCATCTCAATTTATCTGCATCTCATTTTTCGTTCCATGATAACCATGAATCAGATGGATATGCATTATTCAATTGTTCGGGGACCTCTCGTAGAAATAGTACATACTTTTCAATACGGGAGAACTTTTCTTGCCTCGATGTGTCTGGCTATGAAGTTATAGCCATGTCATCTAGAGATAGAATCATGGACAATCCCCTTTTATCTTGCACTAGAATTCATAGCTATGAATCGGTGCCCAATTCTCTTTACAATAACATCAACTTTCTAAGTTCATCAAAAAGGAAAGCACTTGCAGGTGAACTCCTAGGCCCATTTCTGCCTATATTAGTCGGGGTTGTTGTCTACTGTTTCTATTTAGCTGGCCATGAGAGGCAGAGTTACAAAAGGATCAAACAGTTTTTGGAGGACTACAAAGCACTTAGGCCAGCCAGATACACGTATGCAGACATAAAGAGAATCACAAATCAGTTCAAGGATGAACTTGGACAAGGAGCTTTTGGAACTGTCTTTAAAGGGAAGCTATCCAATGAAATTCAGGTTGCTGTTAAGCTTCTAAACACTTCAACGGGAAATGGGCAAGAGTTCATCAATGAAATGGAAACAATGTGTCAAATTCACCATGTCAATGTGGCTCGCTTGTGGCACCCAGCAAATCGTCCAACCATGAAAGCTGTGGTTCAAATGTTGGAAGGAGATGGAGAAAAGTTAATTATGCCTCCTAATCCATTTGGCTCTACACCTCCAACTAGAAAAAGGGTTATTGGACCAAAGCGTCTGACCCCAGAGTTATCAGTCATATCTGAAACAGAGTGA 1155 0.4095 MKQHLDVRHGREAILFRNGIPFLLFCFLTMFAEPGSSDPCIESRCNVYEPDIRFPFRLKGKQPEWCGYNSGFDLYCDETNRTVLELPFSVKFSVDNIDYESQVLTVSYLQGCLAHLNLSASHFSFHDNHESDGYALFNCSGTSRRNSTYFSIRENFSCLDVSGYEVIAMSSRDRIMDNPLLSCTRIHSYESVPNSLYNNINFLSSSKRKALAGELLGPFLPILVGVVVYCFYLAGHERQSYKRIKQFLEDYKALRPARYTYADIKRITNQFKDELGQGAFGTVFKGKLSNEIQVAVKLLNTSTGNGQEFINEMETMCQIHHVNVARLWHPANRPTMKAVVQMLEGDGEKLIMPPNPFGSTPPTRKRVIGPKRLTPELSVISETE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1087 384 Pfam Protein tyrosine and serine/threonine kinase 271 332 IPR001245 GO:0004672|GO:0006468
Dere10g1087 384 Gene3D Phosphorylase Kinase; domain 1 242 340 - -
Dere10g1087 384 Pfam Wall-associated receptor kinase galacturonan-binding 40 106 IPR025287 GO:0030247
Dere10g1087 384 ProSiteProfiles Protein kinase domain profile. 269 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g1087 384 SUPERFAMILY Protein kinase-like (PK-like) 252 330 IPR011009 -
Dere10g1087 384 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 22 195 IPR046948 -
Dere10g1087 384 MobiDBLite consensus disorder prediction 353 384 - -
Dere10g1087 384 ProSitePatterns Protein kinases ATP-binding region signature. 275 297 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1087 Dere-ChrDere10 20237233 20239268 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1087 229 352 Receptor kinase-like Gene Family AT1G66980 39.370 8.98e-19 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Dere10g1087 PK_Tyr_Ser-Thr 5.5e-11 CL0016