Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g1025 ATGGCTATTCACAATGATCATCATGCAGCTTCTGAAGGGATTCTAGAGAACGTATGGGCTAGAATGATCAAAAGTGATGGTGGAATATCAGAAACTGCACCAGAATCTTCCAAGTCATGGGAAGACCTTCCAAACCTAGATTCAAGAGATGGGTCCATGGAGATTCTACCAAGGCTTCCAAGTTTGGGAAGATGGATATCAATGGGAGCTGAGGCATGGGAAGAAATATTAGATGGTTTTCCACAAACAGTTCAAGATTCTTGCTTGGAAATTTGCAGAGACAGTGAATCCAATCACAGAAAGATAGATTTAGAAGAAGAAAATGGTACTGTGAGGGCAAAGAAGGTAGGTGAAAAACGCTACAGAGGAGTGAGAAGAAGGCCATGGGGAAAATATGCAGCAGAAATTAGAGACTCGTCAAGGAAAGGTGCCAGGGTATGGCTTGGGACATTTGAGACAGCTGAGGAAGCAGCTTTGGCTTATGATAAAGCGGCTTGGAGAATTAGAGGTCCAAAGGCTTGCCTTAATTTCCCCATTGAGACTGTCACAAATGCTTTAGGATTTGACCAAAAAGGAAGTTGTGGTTCATCAACTTATGGAGAGGATTATTCTGGTAAATATTGCAGCAGTTCTAGGAAAAGATTGAGGGAAGGCGAAGAGTTTGGTGATATGAAGAATAATGAAGAACCTGCAGTTAAAAAGATGGCAACCTTGGGGAATGAAGTAGACGTTGTTGTGTTTCAGGACTTGGGGAGTGATTACTTGGAGAGCTTGCTCTCATCTTTTTGA 789 0.4221 MAIHNDHHAASEGILENVWARMIKSDGGISETAPESSKSWEDLPNLDSRDGSMEILPRLPSLGRWISMGAEAWEEILDGFPQTVQDSCLEICRDSESNHRKIDLEEENGTVRAKKVGEKRYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFETAEEAALAYDKAAWRIRGPKACLNFPIETVTNALGFDQKGSCGSSTYGEDYSGKYCSSSRKRLREGEEFGDMKNNEEPAVKKMATLGNEVDVVVFQDLGSDYLESLLSSF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g1025 262 PANTHER DNA-BINDING DOMAIN 105 257 IPR044808 GO:0003700|GO:0009873
Dere10g1025 262 CDD AP2 119 179 IPR001471 GO:0003700|GO:0006355
Dere10g1025 262 Gene3D AP2/ERF domain 119 180 IPR036955 GO:0003700|GO:0006355
Dere10g1025 262 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Dere10g1025 262 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Dere10g1025 262 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Dere10g1025 262 SUPERFAMILY DNA-binding domain 120 180 IPR016177 GO:0003677
Dere10g1025 262 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Dere10g1025 262 FunFam Ethylene-responsive transcription factor 2 119 180 - -
Dere10g1025 262 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g1025 Dere-ChrDere10 19171675 19172463 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g1025 1 262 AP2-EREBP Transcription Factor Family AT4G18450 36.449 1.75e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere10g1025 AP2 1.2e-13 CL0081